View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_30 (Length: 362)

Name: NF15322_low_30
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_30
NF15322_low_30
[»] chr5 (15 HSPs)
chr5 (14-121)||(39614742-39614849)
chr5 (202-269)||(39614485-39614552)
chr5 (14-72)||(19803618-19803675)
chr5 (21-66)||(11992295-11992340)
chr5 (22-66)||(11825533-11825577)
chr5 (14-66)||(36060261-36060313)
chr5 (23-66)||(1590130-1590173)
chr5 (15-66)||(36437414-36437465)
chr5 (14-72)||(42674159-42674217)
chr5 (21-66)||(14967070-14967115)
chr5 (14-66)||(249638-249690)
chr5 (19-55)||(8544807-8544843)
chr5 (14-66)||(17557921-17557973)
chr5 (14-66)||(32718052-32718104)
chr5 (14-66)||(37269413-37269465)
[»] chr3 (12 HSPs)
chr3 (14-66)||(25342448-25342500)
chr3 (14-66)||(45646563-45646615)
chr3 (14-66)||(5493516-5493568)
chr3 (21-66)||(20841284-20841329)
chr3 (13-62)||(37031036-37031084)
chr3 (14-66)||(19578295-19578347)
chr3 (14-66)||(21959752-21959804)
chr3 (21-65)||(27817381-27817425)
chr3 (14-66)||(633354-633406)
chr3 (21-57)||(1405199-1405235)
chr3 (14-66)||(2093739-2093791)
chr3 (14-66)||(34668645-34668697)
[»] chr4 (7 HSPs)
chr4 (14-66)||(45666264-45666316)
chr4 (14-66)||(19443641-19443693)
chr4 (15-66)||(38434308-38434359)
chr4 (14-72)||(24538376-24538434)
chr4 (14-60)||(30912606-30912652)
chr4 (14-72)||(49299933-49299991)
chr4 (21-66)||(23529479-23529524)
[»] chr8 (12 HSPs)
chr8 (23-66)||(43026767-43026810)
chr8 (21-66)||(3741575-3741619)
chr8 (23-66)||(16393685-16393728)
chr8 (21-66)||(1530669-1530713)
chr8 (21-66)||(4418535-4418580)
chr8 (21-62)||(34146152-34146193)
chr8 (14-66)||(7578275-7578327)
chr8 (19-55)||(7695367-7695403)
chr8 (14-66)||(14896594-14896646)
chr8 (14-66)||(29315964-29316016)
chr8 (14-66)||(32233593-32233645)
chr8 (14-66)||(36682507-36682559)
[»] chr7 (8 HSPs)
chr7 (15-72)||(15643292-15643349)
chr7 (14-66)||(14771481-14771533)
chr7 (14-66)||(15221933-15221985)
chr7 (14-65)||(4567280-4567331)
chr7 (21-66)||(3835743-3835788)
chr7 (14-69)||(37124134-37124189)
chr7 (21-66)||(4963015-4963060)
chr7 (14-66)||(35793182-35793234)
[»] chr6 (4 HSPs)
chr6 (21-66)||(26252697-26252742)
chr6 (21-66)||(9095849-9095894)
chr6 (14-66)||(2437908-2437960)
chr6 (14-66)||(21527397-21527449)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-82)||(46639-46699)
[»] chr1 (8 HSPs)
chr1 (14-66)||(52414878-52414930)
chr1 (21-67)||(1674847-1674893)
chr1 (14-66)||(11238317-11238369)
chr1 (14-66)||(23699526-23699578)
chr1 (22-69)||(21535881-21535928)
chr1 (21-71)||(32768928-32768978)
chr1 (21-66)||(36320048-36320092)
chr1 (14-66)||(30279975-30280027)
[»] scaffold0118 (1 HSPs)
scaffold0118 (21-66)||(14884-14929)
[»] chr2 (9 HSPs)
chr2 (21-66)||(27746432-27746477)
chr2 (14-66)||(150350-150402)
chr2 (14-66)||(11074028-11074080)
chr2 (14-66)||(25965946-25965998)
chr2 (14-66)||(42756755-42756807)
chr2 (14-72)||(44898069-44898127)
chr2 (21-66)||(4959461-4959506)
chr2 (21-66)||(38589381-38589426)
chr2 (14-66)||(20891375-20891427)
[»] scaffold0188 (1 HSPs)
scaffold0188 (14-66)||(6462-6514)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 39614849 - 39614742
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaatcgagggagtggtagtgaagttatatgatttttcacaaagg 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39614849 caaaggatataattgacaaatcgtatctttaaaataccaaaacgacagttaaaaagaaatcgagggagtggtagtgaagttatatgatttttcacaaagg 39614750  T
Q  114 ggctaagt 121  Q
    | ||||||    
T  39614749 gactaagt 39614742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 39614552 - 39614485
Alignment:
Q  202 aacaagtcaaaaacaccacgaaaagtcacattctcagcacaaggtgtaccgagaaaaagtaaagagtt 269  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39614552 aacaagtcaaaaataccacgaaaagtcacattctcagcacaaggtgtaccgagaaaaagtaaagagtt 39614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 19803675 - 19803618
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    |||||| |||||||||||||||||| | |||||||||||||| |||||||||| |||||    
T  19803675 caaagggtataattgacaaatcgtacccttaaaataccaaaa-gacagttaaatagaaa 19803618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 11992295 - 11992340
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| |||||||||||||||| || |||||||    
T  11992295 tataattgacaaatcgtacctttaaaataccaaaaagaaagttaaa 11992340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 11825533 - 11825577
Alignment:
Q  22 ataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||    
T  11825533 ataattgacaaatcgtacccttaaaatacgaaaacgacagttaaa 11825577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 36060261 - 36060313
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||| |||||||||||   |||||||||||||||||||||||||    
T  36060261 caaagggtataatcgacaaatcgtacacttaaaataccaaaacgacagttaaa 36060313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 1590173 - 1590130
Alignment:
Q  23 taattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||| || |||||||||| ||||||||||||||||    
T  1590173 taattgacaaatcatacctttaaaatatcaaaacgacagttaaa 1590130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 36437414 - 36437465
Alignment:
Q  15 aaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| ||||||||   |||||||||||||| ||||||||||    
T  36437414 aaaggatataattgaaaaatcgtacgcttaaaataccaaaaagacagttaaa 36437465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 42674159 - 42674217
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    |||||| ||| |||||||||| ||| | |||||||||||||| |||||||||| |||||    
T  42674159 caaagggtatcattgacaaattgtacccttaaaataccaaaaagacagttaaatagaaa 42674217  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 14967115 - 14967070
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||| ||| ||||||| || ||||||||||||||||    
T  14967115 tataattgacaaattgtatctttaaactatcaaaacgacagttaaa 14967070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 249638 - 249690
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | ||||||||| |||| ||||||||||    
T  249638 caaagggtataattgacaaatcatatccttaaaatactaaaatgacagttaaa 249690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 8544807 - 8544843
Alignment:
Q  19 gatataattgacaaatcgtaactttaaaataccaaaa 55  Q
    |||||||||||||||||||| | ||||||||||||||    
T  8544807 gatataattgacaaatcgtaccattaaaataccaaaa 8544843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 17557973 - 17557921
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | |||||||| |||||||||| |||||    
T  17557973 caaagggtataattgacaaatcatacccttaaaatatcaaaacgacaattaaa 17557921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 32718052 - 32718104
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||  || | |||||| ||||||||||||||||||    
T  32718052 caaagggtataattgacaaattatatccttaaaaaaccaaaacgacagttaaa 32718104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 37269465 - 37269413
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||  ||||||| | |||||||| ||||||||||||||||    
T  37269465 caaagggtataattgatcaatcgtatccttaaaatatcaaaacgacagttaaa 37269413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25342448 - 25342500
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  25342448 caaaggatataattgacaaatcgtacctttaaaataccaaaacgacggttaaa 25342500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45646615 - 45646563
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  45646615 caaagggtataattgacaaatcgtacctttaaaataccaaaaagacagttaaa 45646563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5493568 - 5493516
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| | |||||||||||||| ||||||||||    
T  5493568 caaagggtataattgacaaatcgtacccttaaaataccaaaaagacagttaaa 5493516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 20841329 - 20841284
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  20841329 tataattgacaaatcgtacccttaaaataccaaaaagacagttaaa 20841284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 37031036 - 37031084
Alignment:
Q  13 gcaaaggatataattgacaaatcgtaactttaaaataccaaaacgacagt 62  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  37031036 gcaaagggtataattgacaaatcgtaa-tttaaaataccaaaaagacagt 37031084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 19578347 - 19578295
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| | ||||||||| ||||||||| |||||    
T  19578347 caaagggtataattgacaaatcgtaccattaaaatactaaaacgacaattaaa 19578295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 21959752 - 21959804
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||| ||||| || | |||||||||||||||||||||||||    
T  21959752 caaagggtataattgataaatcatacccttaaaataccaaaacgacagttaaa 21959804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 27817425 - 27817381
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaa 65  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  27817425 tataattgacaaaccgtacctttaaaataccaaaaagacagttaa 27817381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 633354 - 633406
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||| |||||| |||||||||  ||||||| | ||||||||||||||||    
T  633354 caaaggatgtaattgtcaaatcgtacatttaaaacatcaaaacgacagttaaa 633406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 1405235 - 1405199
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacg 57  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  1405235 tataattgacaaattgtacctttaaaataccaaaacg 1405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 2093791 - 2093739
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | |||||||| ||||| ||||||||||    
T  2093791 caaagggtataattgacaaatcatacccttaaaatatcaaaaagacagttaaa 2093739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 34668697 - 34668645
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||||||   ||||||||| |||| ||||||||||    
T  34668697 caaagggtataattgacaaatcgtacacttaaaatactaaaaagacagttaaa 34668645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45666316 - 45666264
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  45666316 caaagggtataattgacaaatcgtacctttaaaataccaaaaagacagttaaa 45666264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 19443641 - 19443693
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| | |||||||||||||| ||||||||||    
T  19443641 caaagggtataattgacaaatcgtatccttaaaataccaaaaagacagttaaa 19443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 38434308 - 38434359
Alignment:
Q  15 aaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||| ||||||||| ||||  || |||||||||||||||||||||||||||    
T  38434308 aaagggtataattgataaattatacctttaaaataccaaaacgacagttaaa 38434359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 24538376 - 24538434
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    |||||| | ||||||||||||| || | |||||||||||||| |||||||||| |||||    
T  24538376 caaaggttgtaattgacaaatcatacccttaaaataccaaaatgacagttaaatagaaa 24538434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 30912652 - 30912606
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgaca 60  Q
    |||||| ||||||| ||||||||||  ||||||||||||||||||||    
T  30912652 caaagggtataattcacaaatcgtacatttaaaataccaaaacgaca 30912606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 49299933 - 49299991
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    |||||| ||||||||||||||| || | |||||||| ||||| |||||||||| |||||    
T  49299933 caaagggtataattgacaaatcctacccttaaaataacaaaaagacagttaaatagaaa 49299991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 23529524 - 23529479
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| | |||||||| |||||| |||||||||    
T  23529524 tataattgacaaatcgtacccttaaaatatcaaaacaacagttaaa 23529479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 43026767 - 43026810
Alignment:
Q  23 taattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  43026767 taattgacaaatcgtaactttaaaatactaaaacgacagttaaa 43026810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 3741619 - 3741575
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  3741619 tataattgacaaatcgta-ctttaaaataccaaaacgacagttaaa 3741575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 16393728 - 16393685
Alignment:
Q  23 taattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||    
T  16393728 taattgacaaatcgtacctttaaaatacaaaaaagacagttaaa 16393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 1530669 - 1530713
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  1530669 tataattgacaaatcgtacccttaaaataccaaaa-gacagttaaa 1530713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 4418580 - 4418535
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| || | | |||||||||||||||||||||||    
T  4418580 tataattgacaaatcataccctcaaaataccaaaacgacagttaaa 4418535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 34146193 - 34146152
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagt 62  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  34146193 tataattgacaaatcgtacccttaaaataccaaaaagacagt 34146152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 7578275 - 7578327
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||| ||| || | |||||||| ||||||||||||||||    
T  7578275 caaagggtataattgacagatcatacccttaaaatatcaaaacgacagttaaa 7578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 7695367 - 7695403
Alignment:
Q  19 gatataattgacaaatcgtaactttaaaataccaaaa 55  Q
    |||||||||||||||||||| | ||||||||||||||    
T  7695367 gatataattgacaaatcgtacccttaaaataccaaaa 7695403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 14896646 - 14896594
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||| |||||| |||||||||| | || |||||||||||||| ||||||||||    
T  14896646 caaatgatatatttgacaaatcatcaccttaaaataccaaaatgacagttaaa 14896594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 29315964 - 29316016
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||| ||||||||   ||||||||| |||||||||||||||    
T  29315964 caaagggtataattgaaaaatcgtactcttaaaatactaaaacgacagttaaa 29316016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 32233645 - 32233593
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||  | | |||||||||||||| ||||||||||    
T  32233645 caaagggtataattgacaaatcacacccttaaaataccaaaaagacagttaaa 32233593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 36682559 - 36682507
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||| |||||||||||||||||  |  |||||||||| |||||||||||||||    
T  36682559 caaatgatataattgacaaatcacacttttaaaatactaaaacgacagttaaa 36682507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 15643349 - 15643292
Alignment:
Q  15 aaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    ||||| ||||||||| |||||||| | ||||||||||||||||||||||||| |||||    
T  15643349 aaagggtataattgagaaatcgtacccttaaaataccaaaacgacagttaaatagaaa 15643292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 14771481 - 14771533
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  14771481 caaagggtataattgacaaatcatacccttaaaataccaaaacgacagttaaa 14771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 15221933 - 15221985
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  15221933 caaagggtataattgacaaatcatacccttaaaataccaaaacgacagttaaa 15221985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 4567331 - 4567280
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaa 65  Q
    |||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  4567331 caaagggtataatcgacaaatcgtaaccttaaaataccaaaaagacagttaa 4567280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3835743 - 3835788
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||    
T  3835743 tataattgacaaatcgtacccttaaaataccaaaaagacagttaaa 3835788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 37124189 - 37124134
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaag 69  Q
    |||||| |||||||||||||| ||| | |||||||||||||| || ||||||||||    
T  37124189 caaagggtataattgacaaattgtacccttaaaataccaaaaagaaagttaaaaag 37124134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4963015 - 4963060
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||| ||||| || | |||||||||||||||||||||||||    
T  4963015 tataattgataaatcatacccttaaaataccaaaacgacagttaaa 4963060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 35793182 - 35793234
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||  | | |||||||||||||| ||||||||||    
T  35793182 caaagggtataattgacaaatcacacccttaaaataccaaaaagacagttaaa 35793234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 26252697 - 26252742
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||    
T  26252697 tataattgacaaatcgtacctttaaaatatcaaaacgacagttaaa 26252742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9095849 - 9095894
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| || | ||||||||| |||||||||||||||    
T  9095849 tataattgacaaatcatacccttaaaatactaaaacgacagttaaa 9095894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2437908 - 2437960
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | ||||||| |||||| ||||||||||    
T  2437908 caaagggtataattgacaaatcatacccttaaaattccaaaaagacagttaaa 2437960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 21527397 - 21527449
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| | ||||||||||||| || | ||||||||||||||||||| |||||    
T  21527397 caaagggtttaattgacaaatcatacccttaaaataccaaaacgacaattaaa 21527449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 46639 - 46699
Alignment:
Q  22 ataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaatcgagggagt 82  Q
    |||||||||||||| || | |||||||||||||||||||||||||||| ||  ||||||||    
T  46639 ataattgacaaatcatacccttaaaataccaaaacgacagttaaaaaggaacggagggagt 46699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 52414930 - 52414878
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  52414930 caaaggttataattgacaaatcatacccttaaaataccaaaacgacagttaaa 52414878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 1674847 - 1674893
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaaa 67  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||    
T  1674847 tataattgacaaatcgtacccttaaaatactaaaacgacagttaaaa 1674893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 11238317 - 11238369
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| ||||| |||||||||||| | ||||||||||||||| |||||||||    
T  11238317 caaagggtataactgacaaatcgtacccttaaaataccaaaaccacagttaaa 11238369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 23699526 - 23699578
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||||| | ||||||||| |||||||| ||||||    
T  23699526 caaagggtataattgacaaatcgtatccttaaaatacaaaaacgactgttaaa 23699578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 21535881 - 21535928
Alignment:
Q  22 ataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaag 69  Q
    |||||||||||||| || |||||||||||||||| |||| ||||||||    
T  21535881 ataattgacaaatcatacctttaaaataccaaaatgacacttaaaaag 21535928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32768978 - 32768928
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaa 71  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||| ||||    
T  32768978 tataattgacaaatcgtacccttaaaatatcaagacgacagttaaatagaa 32768928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 36320048 - 36320092
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||    
T  36320048 tataattgacaaatcgtacctt-aaaataccaaaaagacagttaaa 36320092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 30280027 - 30279975
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||||| | | ||||||||| |||| ||||||||||    
T  30280027 caaagggtataattgacaaatcgcacccttaaaatactaaaatgacagttaaa 30279975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 14929 - 14884
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| || | |||||||||||||||||||||||||    
T  14929 tataattgacaaatcatacccttaaaataccaaaacgacagttaaa 14884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 27746477 - 27746432
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| || | |||||||||||||||||||||||||    
T  27746477 tataattgacaaatcatacccttaaaataccaaaacgacagttaaa 27746432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 150350 - 150402
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||| ||||||| | |||||||||||||| ||||||||||    
T  150350 caaagggtataattgacgaatcgtacccttaaaataccaaaaagacagttaaa 150402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 11074028 - 11074080
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||||||||||||| ||| | |||||||||||||| ||||||||||    
T  11074028 caaagggtataattgacaaattgtacccttaaaataccaaaaagacagttaaa 11074080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 25965946 - 25965998
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||| |||| ||||||||||||| | ||||||||||||||||| |||||||    
T  25965946 caaagggtatagttgacaaatcgtacccttaaaataccaaaacgatagttaaa 25965998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42756807 - 42756755
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||| ||||||||||||||||| || | ||||||||||||||| |||||||||    
T  42756807 caaaagatataattgacaaatcatacccttaaaataccaaaacaacagttaaa 42756755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 44898127 - 44898069
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaaaagaaa 72  Q
    |||||| ||||||||| |||||||| ||||||||||| |||||||  |||||| |||||    
T  44898127 caaagggtataattgaaaaatcgtacctttaaaatactaaaacgatggttaaacagaaa 44898069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4959461 - 4959506
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||||||||| || | ||||||||||||||||| |||||||    
T  4959461 tataattgacaaatcatacccttaaaataccaaaacgatagttaaa 4959506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 38589381 - 38589426
Alignment:
Q  21 tataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    ||||||||| |||||||| |||||||||||||||| | ||||||||    
T  38589381 tataattgataaatcgtacctttaaaataccaaaatggcagttaaa 38589426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 20891375 - 20891427
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||| ||||||||||| |||| ||| | |||||||| ||||||||||||||||    
T  20891375 caaatgatataattgataaattgtacccttaaaatatcaaaacgacagttaaa 20891427  T

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Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6462 - 6514
Alignment:
Q  14 caaaggatataattgacaaatcgtaactttaaaataccaaaacgacagttaaa 66  Q
    |||||||||||||||| ||||| ||   |||||||||||||||||||||||||    
T  6462 caaaggatataattgataaatcatacacttaaaataccaaaacgacagttaaa 6514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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