View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_32 (Length: 342)

Name: NF15322_low_32
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_32
NF15322_low_32
[»] chr5 (2 HSPs)
chr5 (16-103)||(10521409-10521496)
chr5 (16-54)||(35854650-35854688)
[»] chr4 (3 HSPs)
chr4 (16-72)||(47293564-47293620)
chr4 (15-75)||(55705988-55706048)
chr4 (16-72)||(54304332-54304388)
[»] chr8 (2 HSPs)
chr8 (16-71)||(7972058-7972113)
chr8 (16-70)||(7961689-7961743)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 10521409 - 10521496
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaagatatggtcctactctacgcatgctcttaag 103  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||  |||||| |||||||||| || |||||    
T  10521409 caaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaagatccggtccttctctacgcatacttttaag 10521496  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 35854650 - 35854688
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggtta 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35854650 caaaattgaaggccaatatacctcaaaacagacaggtta 35854688  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 47293564 - 47293620
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaa 72  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  47293564 caaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaa 47293620  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 55705988 - 55706048
Alignment:
Q  15 acaaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaagat 75  Q
    ||||||||||| || |||||||||||||||||| |||||| | ||||||||||||||||||    
T  55705988 acaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagat 55706048  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 54304332 - 54304388
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctcaa 72  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||| || |||||||    
T  54304332 caaaattgaaggccaatatacctcaaaatagtgaggttactcttgttgaactctcaa 54304388  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 7972113 - 7972058
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctca 71  Q
    ||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  7972113 caaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca 7972058  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7961743 - 7961689
Alignment:
Q  16 caaaattgaaggccaatatacctcaaaacagacaggttactcttgtggagctctc 70  Q
    ||||||||||||||||||| |||||||||| ||| |||||| |||||||| ||||    
T  7961743 caaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc 7961689  T

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