View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_33 (Length: 342)

Name: NF15322_low_33
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_33
NF15322_low_33
[»] chr4 (5 HSPs)
chr4 (1-197)||(19957981-19958177)
chr4 (197-326)||(19957807-19957935)
chr4 (85-124)||(2041180-2041219)
chr4 (86-122)||(29802642-29802678)
chr4 (86-122)||(31957601-31957637)
[»] chr8 (1 HSPs)
chr8 (87-122)||(40991854-40991889)
[»] chr6 (1 HSPs)
chr6 (89-124)||(34900626-34900661)
[»] chr3 (2 HSPs)
chr3 (85-124)||(50329678-50329717)
chr3 (85-125)||(6087775-6087815)
[»] chr2 (1 HSPs)
chr2 (87-122)||(2336725-2336760)
[»] chr7 (1 HSPs)
chr7 (91-124)||(23714886-23714919)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 19958177 - 19957981
Alignment:
Q  1 aaacaattctaacaattaatgtagttgatattgttggaacttaatgggagccttaaaacattcgaggttcaaattacatcgaggtaagagcaaccacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19958177 aaacaattctaacaattaatgtagttgatattgttggaatttaatgggagccttaaaacattggaggttcaaattacatcgaggtaagagcaaccacaca 19958078  T
Q  101 tgtgagttggacaccacatcttcatacctgtcacccacttatacattattttttcatccaatgcaagacttttaaccacacttgaaacaccaacaaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19958077 tgtgagttggacaccacatcttcatacctgtcacccacttatacattattttttcatcgaatgcaagacttttaaccacacttgaaacaccaacaaa 19957981  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 19957935 - 19957807
Alignment:
Q  197 attttcttataactaacatttcatatgtaccaatgtcataataataaattatcctcggggaaataagtactttatcctagaccttaaacaagatagactc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19957935 attttcttataactaacatttcatatgtaccaatgtcataataataaattatcatcggggaaataagtactttatcctagaccttaaacaagatagactc 19957836  T
Q  297 tccctatgttgaagagtctctcgttggatg 326  Q
    |||||||||| || ||||||||||||||||    
T  19957835 tccctatgtt-aaaagtctctcgttggatg 19957807  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 2041219 - 2041180
Alignment:
Q  85 taagagcaaccacacatgtgagttggacaccacatcttca 124  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2041219 taagagcaaccacacaagtgagttggacaccacatcttca 2041180  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 29802678 - 29802642
Alignment:
Q  86 aagagcaaccacacatgtgagttggacaccacatctt 122  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  29802678 aagagcaaccacacaagtgagttggacaccatatctt 29802642  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 31957637 - 31957601
Alignment:
Q  86 aagagcaaccacacatgtgagttggacaccacatctt 122  Q
    |||||||||||| || |||||||||||||||||||||    
T  31957637 aagagcaaccacgcaagtgagttggacaccacatctt 31957601  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 40991889 - 40991854
Alignment:
Q  87 agagcaaccacacatgtgagttggacaccacatctt 122  Q
    |||||||||||||| |||||||||||||||||||||    
T  40991889 agagcaaccacacaggtgagttggacaccacatctt 40991854  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 34900626 - 34900661
Alignment:
Q  89 agcaaccacacatgtgagttggacaccacatcttca 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  34900626 agcaaccacacaagtgagttggacaccacatcttca 34900661  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 50329717 - 50329678
Alignment:
Q  85 taagagcaaccacacatgtgagttggacaccacatcttca 124  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  50329717 taagagcaaccacacaagtgggttggacaccacatcttca 50329678  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 6087775 - 6087815
Alignment:
Q  85 taagagcaaccacacatgtgagttggacaccacatcttcat 125  Q
    |||||||||||||||| ||||||| |||||||||| |||||    
T  6087775 taagagcaaccacacaagtgagtttgacaccacattttcat 6087815  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 2336760 - 2336725
Alignment:
Q  87 agagcaaccacacatgtgagttggacaccacatctt 122  Q
    |||||||||||||| |||||||||||||||||||||    
T  2336760 agagcaaccacacaagtgagttggacaccacatctt 2336725  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 23714886 - 23714919
Alignment:
Q  91 caaccacacatgtgagttggacaccacatcttca 124  Q
    |||||||||| |||||||||||||||||||||||    
T  23714886 caaccacacaagtgagttggacaccacatcttca 23714919  T

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