View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_36 (Length: 327)

Name: NF15322_low_36
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_36
NF15322_low_36
[»] chr1 (11 HSPs)
chr1 (29-313)||(34046311-34046595)
chr1 (120-163)||(11700439-11700482)
chr1 (75-164)||(10895313-10895401)
chr1 (119-165)||(48872204-48872250)
chr1 (130-165)||(11624093-11624128)
chr1 (122-165)||(29523575-29523618)
chr1 (72-162)||(5483299-5483389)
chr1 (119-164)||(31492955-31493000)
chr1 (119-164)||(49446471-49446516)
chr1 (120-164)||(9554085-9554129)
chr1 (128-164)||(11867806-11867842)
[»] chr4 (6 HSPs)
chr4 (68-213)||(51291077-51291226)
chr4 (119-163)||(949900-949944)
chr4 (72-165)||(13404158-13404251)
chr4 (119-165)||(14964371-14964417)
chr4 (81-164)||(20580093-20580176)
chr4 (119-165)||(20784974-20785020)
[»] chr8 (9 HSPs)
chr8 (75-211)||(8785252-8785391)
chr8 (119-218)||(28459953-28460056)
chr8 (70-187)||(18808760-18808879)
chr8 (119-164)||(35139042-35139087)
chr8 (75-163)||(38167443-38167531)
chr8 (121-164)||(36782782-36782825)
chr8 (175-213)||(37427292-37427331)
chr8 (122-163)||(18181246-18181287)
chr8 (119-164)||(41207766-41207811)
[»] scaffold0018 (1 HSPs)
scaffold0018 (54-164)||(67657-67767)
[»] scaffold0062 (1 HSPs)
scaffold0062 (70-191)||(2981-3103)
[»] chr3 (6 HSPs)
chr3 (77-165)||(25299055-25299143)
chr3 (122-165)||(50941724-50941767)
chr3 (122-213)||(17517599-17517694)
chr3 (179-212)||(53102328-53102361)
chr3 (123-164)||(53766712-53766753)
chr3 (119-155)||(1094801-1094837)
[»] chr6 (2 HSPs)
chr6 (70-165)||(34185044-34185139)
chr6 (122-212)||(34556191-34556285)
[»] scaffold0717 (1 HSPs)
scaffold0717 (75-164)||(4980-5069)
[»] chr7 (9 HSPs)
chr7 (122-213)||(38973997-38974092)
chr7 (123-165)||(17003436-17003478)
chr7 (119-182)||(34534785-34534850)
chr7 (122-158)||(17302936-17302972)
chr7 (119-165)||(8327847-8327893)
chr7 (122-164)||(21513068-21513110)
chr7 (77-163)||(42265410-42265497)
chr7 (139-192)||(16180460-16180515)
chr7 (70-102)||(32723833-32723865)
[»] scaffold0027 (1 HSPs)
scaffold0027 (77-211)||(13305-13441)
[»] chr5 (5 HSPs)
chr5 (75-212)||(17977677-17977818)
chr5 (75-165)||(543999-544089)
chr5 (119-164)||(31537739-31537784)
chr5 (119-192)||(20041605-20041680)
chr5 (125-165)||(2112592-2112632)
[»] scaffold0009 (1 HSPs)
scaffold0009 (119-165)||(168776-168822)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 34046311 - 34046595
Alignment:
Q  29 ctcggttgtttagctatttaaatatttaacgagtattctgaggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaa 128  Q
    ||||||| |||||||||||||| ||||||||||| |||||| ||||| |||||| |||| ||||||||||||||||||||       ||||||| |||||    
T  34046311 ctcggttatttagctatttaaacatttaacgagtgttctgaagcattttttaagtatttttaatgaagaaattattctttaaaaaaagtgaagatttcaa 34046410  T
Q  129 tttccaaagcaataaatgcacaaactttcataaaatcatcattttgagtgcttaaagagtgtccggagcactcgttaacatttccgttaaacattatctc 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  34046411 tttccaaagcaataaatgcacaaactttcataaaatcaccattttgagtgcttaaagagtgtccggggcactcgttaacatttcccttaaacattatctc 34046510  T
Q  229 attagacggttaaccatactgtgaaaccctaacctgtgaaactaaatggcgatgaccgatgagtgtagttcagcctttcatagtt 313  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34046511 attagacggttaaccatacagtgaaaccctaacctgtgaaactaaatggcgatgaccaatgagtgtagttcagcctttcatagtt 34046595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 11700439 - 11700482
Alignment:
Q  120 agacttcaatttccaaagcaataaatgcacaaactttcataaaa 163  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  11700439 agacttcaatttccaatgcaataaatgcacaaactttcataaaa 11700482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 10895313 - 10895401
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||| ||||| |||||||||| |||||||||       || ||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  10895313 tctttaaacatttttaatgaagaagttattctttaaaaaaagt-aagactttaattttcaatgcaataaatgcacaaactttcataaaat 10895401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 48872204 - 48872250
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||    
T  48872204 aagacttcaatttccaatgtaataaatgcataaactttcataaaatc 48872250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 11624128 - 11624093
Alignment:
Q  130 ttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||| |||||||||||||||||||||||||||||    
T  11624128 ttccaatgcaataaatgcacaaactttcataaaatc 11624093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 29523618 - 29523575
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||    
T  29523618 acttcaatttccaatgcaataaatacacaaactttcatacaatc 29523575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 5483299 - 5483389
Alignment:
Q  72 cattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaa 162  Q
    ||||||||||| |||| ||||||||||||||||||||        | |||| || |||||| || | |||||||||||||| |||||||||    
T  5483299 cattctttaagaatttataatgaagaaattattctttaaaaaaattaaagattttaatttctaatgaaataaatgcacaaattttcataaa 5483389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 31493000 - 31492955
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||| ||||||||| ||  |||||||||||||||||||||||||||    
T  31493000 aagatttcaatttctaatacaataaatgcacaaactttcataaaat 31492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 49446471 - 49446516
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||||||||| ||| |||||||||||||||||||  |||||||    
T  49446471 aagacttcaattttcaatgcaataaatgcacaaacttctataaaat 49446516  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 9554085 - 9554129
Alignment:
Q  120 agacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||||||||||| |||  || ||||||||||||||||||||||||    
T  9554085 agacttcaattttcaatacattaaatgcacaaactttcataaaat 9554129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 11867806 - 11867842
Alignment:
Q  128 atttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||| || ||||||||||||||||||||||||||||    
T  11867806 atttctaatgcaataaatgcacaaactttcataaaat 11867842  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 51291077 - 51291226
Alignment:
Q  68 gaggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc-- 165  Q
    |||||| ||||||| |||| ||||||||||| |||||||||        | ||||||||||||||||| |||||||||||||||||||||||||||||      
T  51291077 gaggcactctttaaacattcctaatgaagaagttattctttaaaataattaaagacttcaatttccaatgcaataaatgcacaaactttcataaaatctt 51291176  T
Q  166 atcattttgagtgcttaaagagtg--tccggagcactcgttaacatttcc 213  Q
    | ||||||  ||||||||||||||   |||| ||||||||||||||||||    
T  51291177 accattttaggtgcttaaagagtgcccccggggcactcgttaacatttcc 51291226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 949944 - 949900
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaa 163  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||    
T  949944 aagacttcaattttcaatgcaataaatgcacaaactttcataaaa 949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 13404158 - 13404251
Alignment:
Q  72 cattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||||||||||||  |||||||||||||||| |||       |  ||||||||||||||||| | ||||||| || ||||||||||||||||    
T  13404158 cattctttaagcattcataatgaagaaattattttttttaaaaagctaagacttcaatttccaacgtaataaatacataaactttcataaaatc 13404251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 14964371 - 14964417
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||    
T  14964371 aagacttcaattttcaatgtaataaatgcacaaactttcataaaatc 14964417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 20580176 - 20580093
Alignment:
Q  81 agcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||||| ||||||||||||||||| |||       || |||||||||||||||||   ||||||| || |||||||||||||||    
T  20580176 agcattcctaatgaagaaattattatttaaaaaaagtaaagacttcaatttccaatataataaatacataaactttcataaaat 20580093  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 20784974 - 20785020
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||||| ||| |||||||||| ||||||||| ||||||||    
T  20784974 aagacttcaattttcaatgcaataaatgaacaaacttttataaaatc 20785020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 8785391 - 8785252
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc--atcattt 172  Q
    |||||||||||| |||||||| ||||||||||||       || || | |||||||||||| ||||||||| |||||| ||||||||||||  | || ||    
T  8785391 tctttaagcattcctaatgaataaattattctttaaaaaaagtaaaaatttcaatttccaatgcaataaatacacaaaatttcataaaatcttaccactt 8785292  T
Q  173 tgagtgcttaaagagtgtccg-gagcactcgttaacattt 211  Q
    || |||||||||||||| ||| ||||||||||||||||||    
T  8785291 tgggtgcttaaagagtgcccgagagcactcgttaacattt 8785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 28460056 - 28459953
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc--atca-ttttgagtgcttaaagagtg-tcc-ggagcactcgttaacatttcc 213  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||  | || |||||| ||||||||||||| ||| |||||||||||||||||||||    
T  28460056 aagacttcaatttccaatgcaataaatgcacaaactttaataaaatcttaccacttttga-tgcttaaagagtgatccgggagcactcgttaacatttcc 28459958  T
Q  214 gttaa 218  Q
     ||||    
T  28459957 cttaa 28459953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 18808879 - 18808760
Alignment:
Q  70 ggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc--at 167  Q
    |||| ||||||| |||| |||||||||||| |||| |||       || |||||||||||||| || |||||||||||| ||||||||||||||||  |     
T  18808879 ggcactctttaaacattcctaatgaagaaactattgtttaaaaaaagtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttac 18808780  T
Q  168 cattttgagtgcttaaagag 187  Q
    ||||||  ||||||||||||    
T  18808779 cattttaggtgcttaaagag 18808760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 35139087 - 35139042
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  35139087 aagacttcaattttcaatgcaataaatgcacaaactttcataaaat 35139042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 38167443 - 38167531
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaa 163  Q
    |||||||||||| || ||||||||||||||||||        | || ||||||||||||||  ||||||||||||| ||||||||||||    
T  38167443 tctttaagcattacttatgaagaaattattctttaaaaaaaataaaaacttcaatttccaatacaataaatgcacagactttcataaaa 38167531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 36782825 - 36782782
Alignment:
Q  121 gacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||||||| |||  |||||||||||||||||||||||||||    
T  36782825 gacttcaattttcaatacaataaatgcacaaactttcataaaat 36782782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 37427292 - 37427331
Alignment:
Q  175 agtgcttaaagagtgtccgga-gcactcgttaacatttcc 213  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  37427292 agtgcttaaagagtgtccggaggcactcgttaacatttcc 37427331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 18181287 - 18181246
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaa 163  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  18181287 acttcaattttcaatgcaataaatacacaaactttcataaaa 18181246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 41207766 - 41207811
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  41207766 aagactttaattttcaatgcaataaatgcacaaacattcataaaat 41207811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 67657 - 67767
Alignment:
Q  54 ttaacgagtattctgaggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaac 153  Q
    ||||||| ||| || || || ||||||||||||||||||||||||||||||||||       || |||| || |||||||||| |||||||| |||||||    
T  67657 ttaacgaatatcctcagacactctttaagcatttctaatgaagaaattattctttaaaaaatgtaaagattttaatttccaaaacaataaatacacaaac 67756  T
Q  154 tttcataaaat 164  Q
    |||||||||||    
T  67757 tttcataaaat 67767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 2981 - 3103
Alignment:
Q  70 ggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc--at 167  Q
    |||| |||||||||||||||||| |||||||||||||||       || || |||||||||||||  |||||||||||||||||||||||||||||  |     
T  2981 ggcactctttaagcatttctaataaagaaattattctttaaaaaaagtaaa-acttcaatttccactgcaataaatgcacaaactttcataaaatcttac 3079  T
Q  168 cattttgagtgcttaaagagtgtc 191  Q
     | |||| ||||||||||||||||    
T  3080 tactttgggtgcttaaagagtgtc 3103  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 25299143 - 25299055
Alignment:
Q  77 tttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||||||||||||| |||||||||||||||       || |||| |||||||| ||| |||||||||||||||||||||||||||||    
T  25299143 tttaagcatttctaataaagaaattattctttaaaaaaagtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatc 25299055  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 50941724 - 50941767
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  50941724 acttcaatttccaatgcaataaatgcacaaactttcataaaatc 50941767  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 17517599 - 17517694
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaatc--atcattttgagtgcttaaagagtg-tccgga-gcactcgttaacatttcc 213  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||  | || |||| |||||||| |||||  ||||| ||||||||||||||||||    
T  17517599 actttaatttccaatgcaataaatgcacaaactttcatacaatcttaccactttgggtgcttaatgagtgccccggaggcactcgttaacatttcc 17517694  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 53102361 - 53102328
Alignment:
Q  179 cttaaagagtgtccggagcactcgttaacatttc 212  Q
    |||||||||||| |||||||||||||||||||||    
T  53102361 cttaaagagtgttcggagcactcgttaacatttc 53102328  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 53766753 - 53766712
Alignment:
Q  123 cttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||    
T  53766753 cttcaattttcaatgcaataaatacacaaactttcataaaat 53766712  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 1094801 - 1094837
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactt 155  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  1094801 aagactttaatttccaatgcaataaatgcacaaactt 1094837  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 34185139 - 34185044
Alignment:
Q  70 ggcattctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||| |||||||||||| ||||| |||||||||||||||        | ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  34185139 ggcactctttaagcattcctaataaagaaattattctttaaaatgattaaagacttcaatttccaatgcaataaatgcacaaactttcattaaatc 34185044  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 34556191 - 34556285
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaa---tcatcattttgagtgcttaaagagtgtcc-ggagcactcgttaacatttc 212  Q
    ||||||||||||||  ||||||||| ||||||||||||||||   | | ||| ||| |||||||||||||||||  | ||||||| |||||||||    
T  34556191 acttcaatttccaatacaataaatgtacaaactttcataaaaattttaccatcttgggtgcttaaagagtgtcctagggcactcgctaacatttc 34556285  T

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Target: scaffold0717 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 5069 - 4980
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||||||||||| |||||||||||||||||||||       || |||||||||||||||||  ||| ||||||| |||||||||| ||||    
T  5069 tctttaagcattcctaatgaagaaattattctttaaaaaaagtaaagacttcaatttccaatacaaaaaatgcataaactttcattaaat 4980  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 38974092 - 38973997
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaa--tcatcattttgagtgcttaaagagtgtc-cgga-gcactcgttaacatttcc 213  Q
    |||||||||||||| |||||||||||||||||||||||||||  | | || |||||||||| ||||| | || |||| ||||||||||||||||||    
T  38974092 acttcaatttccaatgcaataaatgcacaaactttcataaaagcttaccactttgagtgctcaaagaatatctcggaggcactcgttaacatttcc 38973997  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 17003436 - 17003478
Alignment:
Q  123 cttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  17003436 cttcaatttccaatgcaataaatgcacaaactttcataaaatc 17003478  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 34534850 - 34534785
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaa--tcatcattttgagtgctta 182  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||  | ||||||||| |||||||    
T  34534850 aagacttcaatttccaatgcaataaatgcacaaacttttataaaattttatcattttgggtgctta 34534785  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 17302936 - 17302972
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttca 158  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17302936 acttcaatttccaatgcaataaatgcacaaactttca 17302972  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 8327893 - 8327847
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||    
T  8327893 aagacttcaatttccaatacaataaatacacaaacttttataaaatc 8327847  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 21513068 - 21513110
Alignment:
Q  122 acttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||    
T  21513068 acttcaatttccaatgcagtaaatgcacaaacttccataaaat 21513110  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 42265410 - 42265497
Alignment:
Q  77 tttaagcatttctaatgaagaaattattctttnnnnnnn-gtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaa 163  Q
    |||||||||| || ||||||||||||||||||        || || |||||||||| ||| |||||||||||||||||||| ||||||    
T  42265410 tttaagcattccttatgaagaaattattctttaaaaaaaagtaaaaacttcaatttacaatgcaataaatgcacaaacttttataaaa 42265497  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 16180460 - 16180515
Alignment:
Q  139 aataaatgcacaaactttcataaaatc--atcattttgagtgcttaaagagtgtcc 192  Q
    |||||||||||||||||||||||||||  |||| ||| |||| ||||| |||||||    
T  16180460 aataaatgcacaaactttcataaaatcttatcactttaagtgtttaaaaagtgtcc 16180515  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 32723833 - 32723865
Alignment:
Q  70 ggcattctttaagcatttctaatgaagaaatta 102  Q
    |||||||||||||||||||||||||| ||||||    
T  32723833 ggcattctttaagcatttctaatgaaaaaatta 32723865  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 13441 - 13305
Alignment:
Q  77 tttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaa--tcatcattttg 174  Q
    ||||||||||| |||| || ||||||||||||       || ||  ||| ||||||||| ||||||| | |||||||||||||||||  | | |||||||    
T  13441 tttaagcatttataataaaaaaattattctttaaaaatagtaaaatctttaatttccaatgcaataattacacaaactttcataaaattttaacattttg 13342  T
Q  175 agtgcttaaagagtgtccggagcactcgttaacattt 211  Q
     ||||||||||||||||  | ||| ||||||||||||    
T  13341 ggtgcttaaagagtgtctcgggcattcgttaacattt 13305  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 17977818 - 17977677
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnn---gtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc--atca 169  Q
    ||||||||||||  ||||||||||||||||||||          ||||| ||| |||||||||| |||||||||||| ||||||||| ||||||  | ||    
T  17977818 tctttaagcattcataatgaagaaattattctttaaataaaagtgtgaatactacaatttccaatgcaataaatgcataaactttcagaaaatcttacca 17977719  T
Q  170 ttttgagtgcttaaagagtgtccggagcactcgttaacatttc 212  Q
     ||||  |||||||| |||||| || |||||||||||||||||    
T  17977718 ctttggatgcttaaa-agtgtcaggggcactcgttaacatttc 17977677  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 543999 - 544089
Alignment:
Q  75 tctttaagcatttctaatgaagaaattattctttnnnnnnngtgaagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||||||||| || |||||||||||||          || |||||||||||||| |||||||||||||| ||||| ||||||||    
T  543999 tctttaagcatttctaacgaggaaattattctttaaaaaaaagtaaaacttcaatttccaacgcaataaatgcacacacttttataaaatc 544089  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 31537739 - 31537784
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaat 164  Q
    |||||||||||||| || |||||| |||||||||||||||||||||    
T  31537739 aagacttcaatttctaatgcaatatatgcacaaactttcataaaat 31537784  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 20041680 - 20041605
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaa--tcatcattttgagtgcttaaagagtgtcc 192  Q
    ||||||||||||||||| |||||||||||| ||| |||| |||||  | ||||||||   ||||||||||||||||    
T  20041680 aagacttcaatttccaatgcaataaatgcataaattttcgtaaaattttatcattttagatgcttaaagagtgtcc 20041605  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 2112592 - 2112632
Alignment:
Q  125 tcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||||||| |||||||||||||||| ||| ||||||||    
T  2112592 tcaatttccaatgcaataaatgcacaaaattttataaaatc 2112632  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 168822 - 168776
Alignment:
Q  119 aagacttcaatttccaaagcaataaatgcacaaactttcataaaatc 165  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||    
T  168822 aagactttaatttccaatataataaatgcacaaactttcataaaatc 168776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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