View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_4 (Length: 588)
Name: NF15322_low_4
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 148 - 570
Target Start/End: Complemental strand, 43387668 - 43387246
Alignment:
| Q |
148 |
gcaagtagcaactagcaaaatcactcattcataaaagaccaaattctaattaaatgcgatggacatgtattttgggaaccctaattctaacccttatcac |
247 |
Q |
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| T |
43387668 |
gcaaatagcaactagcaaaatcactcattcataaaagaccaaattctaattaaatgcgatggacatgtattttggaaaccctaattctaacccttatcac |
43387569 |
T |
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| Q |
248 |
aataatgatatatctcctcctcctccttcctcgtccgatttcattaatttatctgattatctggtgctggatgatgcacatcaagaatgttggtcacaaa |
347 |
Q |
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| T |
43387568 |
aataataatatatctcctcctcctcctttctcgtctgatttcattaatttatctgattatctggtgctggatgatgaacatcaagaatgttggtcacaaa |
43387469 |
T |
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| Q |
348 |
gtacaggaactgaatcatcagacaacaaggcaccttccaccaccattgatattaatgtcatcaatcaaggattaatttgtgatgaaattgaaacctctac |
447 |
Q |
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| T |
43387468 |
gtacaggaactgaatcatcagacaacaaggcaccttccaccaccattgatattaatgtcatcaatcaaggattaatttgtgatgaaattgaaacctctac |
43387369 |
T |
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| Q |
448 |
caacaacaacaataacatgatgcaagtgcttttcatatgttaaccacttatgtgatgttaattcttgacatacagataaatataataatgtatatatatt |
547 |
Q |
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| T |
43387368 |
caacaacaacaataacatgatgcaagtgcttttcatatgttaaccacttatgtgatgttaattcttgacatacagataaatataataatgtatatatatt |
43387269 |
T |
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| Q |
548 |
ttggattctttggtttgacagga |
570 |
Q |
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| T |
43387268 |
ttggattctttggtttgacagga |
43387246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43387815 - 43387768
Alignment:
| Q |
1 |
tcgacgaaaatgttgggaaggatccttcttctttcacaattcaaacag |
48 |
Q |
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| T |
43387815 |
tcgacgaaaatgtttggaaggatccttcttctttcacaattcaaacag |
43387768 |
T |
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