View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_40 (Length: 303)
Name: NF15322_low_40
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 4921518 - 4921784
Alignment:
| Q |
17 |
caacatttataaaagagctatgccatcaattttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcgg |
116 |
Q |
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| T |
4921518 |
caacatttataaaagaactatgccatgagttttctctggacgatcttaagaaagctaccaataactttgataaaaatcgaaaaattggacaagtaaacta |
4921617 |
T |
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| Q |
117 |
caatatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatgaaagaatcgttcaag |
216 |
Q |
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| T |
4921618 |
caatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataaaagatacatacatgaaagaaacgttcaag |
4921717 |
T |
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| Q |
217 |
aatgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgacc |
283 |
Q |
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| T |
4921718 |
aatgaaattgaactccactgccagatttgtcatccaaatttgatatctttgataggattttgtgacc |
4921784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 4927760 - 4928026
Alignment:
| Q |
17 |
caacatttataaaagagctatgccatcaattttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcgg |
116 |
Q |
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||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
4927760 |
caacatttataaatgagctatgccatgagttttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggaaaagtaatggg |
4927859 |
T |
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| Q |
117 |
caatatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatgaaagaatcgttcaag |
216 |
Q |
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| T |
4927860 |
cgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacagatgtatttaggggacaaggtttcaag |
4927959 |
T |
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| Q |
217 |
aatgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgacc |
283 |
Q |
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| T |
4927960 |
aatgaaatagaacacctctgccagctttgtcacccaaatttgatatcttttataggattttgtgacc |
4928026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 4904526 - 4904366
Alignment:
| Q |
17 |
caacatttataaaagagctatgccatcaattttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcgg |
116 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||| || || ||||||||| | | ||||||||||||||||| ||||||| ||||| || | |
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| T |
4904526 |
caacatctataaaagaactatgccatcaattttctcttgaagatcttaagaaatcaagcaataactttgatgaaactcgaaaacttggacaatcactata |
4904427 |
T |
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| Q |
117 |
caatatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattg |
177 |
Q |
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|| ||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| |
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| T |
4904426 |
cagtatagtgtacaaaggttatctcaaacataatggtgaaaatgagtatccagtagcattg |
4904366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 4908444 - 4908184
Alignment:
| Q |
23 |
ttataaaagagctatgccatcaattttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcggcaatat |
122 |
Q |
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||||| |||||| ||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||| ||| || ||| || || | || ||| |
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| T |
4908444 |
ttatagaagagcgatgccatcaattttctctggatgatcttaagaaatctactaataactttgacgaacatctaagaatagggttaacagaattcagtat |
4908345 |
T |
|
| Q |
123 |
agtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattca-tgaaagaatcgttcaagaatga |
221 |
Q |
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|| |||||||||||| ||||| |||||||||||| |||||||||||||||| || ||||| | | ||| ||| | |||| | | ||||||||| || |
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| T |
4908344 |
agcttacaaaggttatctcaaacataatggtgaaactgattatccaatagcagtgaaacggatgatacatatatttaatgaatggaa-gttcaagaagga |
4908246 |
T |
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| Q |
222 |
aattgaactccactgccagctttctcacccaaatttgatatctttgataggattttgtgacc |
283 |
Q |
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|||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||| |
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| T |
4908245 |
aattgaactcaactgccagcttcatcacccaaatttgacgtcttttataggattctgtgacc |
4908184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 5821803 - 5821958
Alignment:
| Q |
17 |
caacatttataaaagagctatgccatcaattttctctggacgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattggagaaatatgcgg |
116 |
Q |
| |
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||||| ||||| |||||||||| |||||||||||||| || || |||| |||| | ||||||||||| | |||| ||||||||||| || || | |
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| T |
5821803 |
caacagttatagaagagctatgtcatcaattttctcttgaagaacttaggaaatcaaccaataacttcgctgaagatcgaaaaattagaaaatcactatt |
5821902 |
T |
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| Q |
117 |
caatatagtgtacaaaggttatgtcaaatataatggtgaaaatgattatccaatag |
172 |
Q |
| |
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|| ||||||||||||||||||| ||||| ||| |||||||| ||| |||||||||| |
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| T |
5821903 |
cagtatagtgtacaaaggttatctcaaacatagtggtgaaactgagtatccaatag |
5821958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 4904333 - 4904268
Alignment:
| Q |
210 |
gttcaagaatgaaattgaactccactgccagctttctcacccaaatttgatatctttgataggatt |
275 |
Q |
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||||||||| | ||||||||||||| |||| ||| |||||| |||||||||||||| |||||||| |
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| T |
4904333 |
gttcaagaaggtaattgaactccacagccaacttcatcaccctaatttgatatctttaataggatt |
4904268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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