View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_low_41 (Length: 302)
Name: NF15322_low_41
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 15852667 - 15852816
Alignment:
| Q |
133 |
tgttcagcaaatgtggtgaaaggtagcagttccttttcacacattggaggtaatccatatcttgctagtttttgttttaagcataatgatactggatgga |
232 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15852667 |
tgttcagcaaatgtggtgaaaggtagaaattccttttcacacattagaggtaattcatatctggctagttttgatagtaagcataatgatactggatgga |
15852766 |
T |
|
| Q |
233 |
ttgtagacacaggaacaactcatcatacttgttatgatttgaatgggttt |
282 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
15852767 |
ttgtagacacaaaagaaactcatcatacttgttatgatttgaattggttt |
15852816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 15852556 - 15852663
Alignment:
| Q |
60 |
aggaatcacacttacaaaggatcagtatcagaag---atgatgaccttgttggaaaagaacaatcttgaagcaaaatgttcagcaaatgtggtgaaaggt |
156 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15852556 |
aggaatcacacttccaaaggatcagtatcagaaactcataatgactttgttggaaaagaaaaatcttgaagctaaatgttcagcaaatgtggtgaaaggt |
15852655 |
T |
|
| Q |
157 |
agcagttc |
164 |
Q |
| |
|
|| ||||| |
|
|
| T |
15852656 |
agaagttc |
15852663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 37175503 - 37175708
Alignment:
| Q |
70 |
cttacaaaggatcagtatcagaagatgatgaccttgttggaaaagaacaatcttgaagcaaaatgttcagcaaatgtggtgaaaggtagcagttcctttt |
169 |
Q |
| |
|
||||||||||| ||||||||||| | ||| | | ||||||||||| ||||||||| | || || ||||| ||||||||||||||||||| || ||| |
|
|
| T |
37175503 |
cttacaaaggaccagtatcagaatcttatgtcactattggaaaagaataatcttgaaactaagtgctcagctaatgtggtgaaaggtagcaactctattt |
37175602 |
T |
|
| Q |
170 |
cacacattggaggtaatccatatcttgctagtttttgttttaagcataatgatactggatggattgtagacacaggaacaactcatcatacttgttatga |
269 |
Q |
| |
|
||| | ||| | |||| || ||||||||||||| | |||||| |||||| |||||||||| ||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
37175603 |
cactctttgaaagtaaatcacttcttgctagttttgatagtaagcaaaatgatcctggatggatagtagatacaggagcaactcatcacacttgttatga |
37175702 |
T |
|
| Q |
270 |
tttgaa |
275 |
Q |
| |
|
|||||| |
|
|
| T |
37175703 |
tttgaa |
37175708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 275
Target Start/End: Original strand, 22842061 - 22842296
Alignment:
| Q |
40 |
agcaagaattaagaaagtttaggaatcacacttacaaaggatcagtatcagaagatgatgaccttgttggaaaagaacaatcttgaagcaaaatgttcag |
139 |
Q |
| |
|
|||| |||| |||||||| ||| |||| ||||| |||||||| |||||||| ||||| | | |||||||||| || ||||| |||| ||||||| |
|
|
| T |
22842061 |
agcaggaatgaagaaagtgcaggggtcactcttactaaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcag |
22842160 |
T |
|
| Q |
140 |
caaatgtggtgaaaggtagcagttccttttcacacattggaggtaatccatatcttgctagtttttgttttaagcataatgatactggatggattgtaga |
239 |
Q |
| |
|
||||||| |||||||||| || || || |||| |||||||||||| ||| | |||||| |||| | ||||||| |||||||||||||||| |||| |
|
|
| T |
22842161 |
caaatgttgtgaaaggtatcaattactcttcatttattggaggtaattcatgttttgctaattttgatgataagcatgctgatactggatggattataga |
22842260 |
T |
|
| Q |
240 |
cacaggaacaactcatcatacttgttatgatttgaa |
275 |
Q |
| |
|
|||||| | || |||||||| |||| ||||||||| |
|
|
| T |
22842261 |
tacaggagctacacatcatacatgttttgatttgaa |
22842296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 14233603 - 14233802
Alignment:
| Q |
76 |
aaggatcagtatcagaagatgatgaccttgttggaaaagaacaatcttgaagcaaaatgttcagcaaatgtggtgaaaggtagcagttccttttcacaca |
175 |
Q |
| |
|
|||||||| |||||||| ||||| | | |||||||||| || ||||| |||| |||||||||||||| |||||||||| || || || |||| | |
|
|
| T |
14233603 |
aaggatcaatatcagaatctgatgtctctattggaaaagagtaaccttgagacaaagtgttcagcaaatgttgtgaaaggtatcaattactcttcattta |
14233702 |
T |
|
| Q |
176 |
ttggaggtaatccatatcttgctagtttttgttttaagcataatgatactggatggattgtagacacaggaacaactcatcatacttgttatgatttgaa |
275 |
Q |
| |
|
||||||||||| ||| | || ||| |||| | ||||||| |||||||||||||||| |||| |||||| | || |||||||| |||| ||||||||| |
|
|
| T |
14233703 |
ttggaggtaattcatgtttttctaattttgatgataagcatgctgatactggatggattatagatacaggagctacacatcatacctgttttgatttgaa |
14233802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University