View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_45 (Length: 256)

Name: NF15322_low_45
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_45
NF15322_low_45
[»] chr7 (4 HSPs)
chr7 (1-256)||(1650022-1650279)
chr7 (171-217)||(24673341-24673387)
chr7 (171-216)||(1668333-1668378)
chr7 (171-218)||(27720475-27720522)
[»] chr5 (3 HSPs)
chr5 (173-216)||(8582378-8582421)
chr5 (174-216)||(6889594-6889636)
chr5 (171-216)||(6859979-6860024)
[»] chr6 (1 HSPs)
chr6 (158-216)||(30532095-30532153)
[»] chr4 (1 HSPs)
chr4 (171-216)||(46899887-46899932)
[»] chr3 (2 HSPs)
chr3 (171-216)||(36060366-36060411)
chr3 (171-215)||(21866679-21866723)
[»] chr1 (1 HSPs)
chr1 (171-216)||(29928319-29928364)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1650022 - 1650279
Alignment:
Q  1 ctttaccaaccaacctacgttgactaatatttcaagttttgattggtcacaatttgtatccatgcaatgacacaatgtgagacgagcatttgaacaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1650022 ctttaccaaccaacctacgttgactaatatttcaagttttgattggtcacaatttgtatccatgcaatgacacaatgtgagacgagcatttgaacaagtt 1650121  T
Q  101 attgttctgcaatatacatatttag--tagtgttgtcaagtagtggctatagcggctgagtagtgcagaagcatttgaacaaaccactattttctgtgat 198  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1650122 attgttctgcaatatacatatttagtatagtgttgtcaagtagtggctatagcggctgagtagtgcagaagcatttgaacaaaccactattttctgtgac 1650221  T
Q  199 acacaattgacaacactgcaatgaagtttatcacagtttacccacttatttcatgttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1650222 acacaattgacaacactgcaatgaagtttatcacagtttacccacttatttcatgttt 1650279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 24673387 - 24673341
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactgc 217  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||    
T  24673387 atttgaacaaaccactattttctgtgatccgcaattaacaacactgc 24673341  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 1668378 - 1668333
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||    
T  1668378 atttgaacaaaccgctattttccgtgattcacaattgacaacactg 1668333  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 27720475 - 27720522
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactgca 218  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||||    
T  27720475 atttgaacaaaccactattttccatgatccgcaattgacaacactgca 27720522  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 8582378 - 8582421
Alignment:
Q  173 ttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  8582378 ttgaacaaaccactattttctgtgacccacaattgacaacactg 8582421  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 6889594 - 6889636
Alignment:
Q  174 tgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  6889594 tgaacaaaccactattttttgtgatccacaattgacaacactg 6889636  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 6859979 - 6860024
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    |||||||||||||||| |||| || ||| |||||||||||||||||    
T  6859979 atttgaacaaaccacttttttttgcgatccacaattgacaacactg 6860024  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 30532153 - 30532095
Alignment:
Q  158 gtagtgcagaagcatttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    |||||| ||| | ||| |||||||||||||||||||||||| | |||||||||||||||    
T  30532153 gtagtgtagaggaattcgaacaaaccactattttctgtgatccgcaattgacaacactg 30532095  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 46899932 - 46899887
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  46899932 atttgaacaaagcacaattttctgtgatccacaattgacaacactg 46899887  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 36060366 - 36060411
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    |||||||||||||||||||||| | ||| | |||||||||||||||    
T  36060366 atttgaacaaaccactattttccgggattcgcaattgacaacactg 36060411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 21866679 - 21866723
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacact 215  Q
    ||||||||||||| ||||||||||  || ||||||||||||||||    
T  21866679 atttgaacaaaccgctattttctgcaatccacaattgacaacact 21866723  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 29928319 - 29928364
Alignment:
Q  171 atttgaacaaaccactattttctgtgatacacaattgacaacactg 216  Q
    ||||||||||||| ||||||  |||||| |||||||||||||||||    
T  29928319 atttgaacaaaccgctatttcatgtgattcacaattgacaacactg 29928364  T

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