View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_46 (Length: 252)

Name: NF15322_low_46
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_46
NF15322_low_46
[»] chr4 (3 HSPs)
chr4 (40-242)||(43397085-43397292)
chr4 (54-107)||(27131678-27131731)
chr4 (44-107)||(7422153-7422216)
[»] chr6 (2 HSPs)
chr6 (54-107)||(2468478-2468531)
chr6 (51-99)||(10338607-10338655)
[»] chr1 (2 HSPs)
chr1 (35-108)||(36552252-36552325)
chr1 (60-101)||(2445459-2445500)
[»] chr5 (3 HSPs)
chr5 (59-105)||(18542218-18542264)
chr5 (59-107)||(12976658-12976706)
chr5 (37-105)||(28735820-28735887)
[»] chr8 (1 HSPs)
chr8 (54-95)||(18992471-18992512)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 43397085 - 43397292
Alignment:
Q  40 acaatgacacataaacattagtaatca-tttaagaaaatagtagtaattgaatgtaatcacatgtgttgttgtacaccaattccgtcagacacgaacata 138  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43397085 acaatgacacataaacattagtaatcaatttaagaaaatagcagtaattgaatgtaatcacatgtgttgttgtacaccaattccgtcggacacgaacata 43397184  T
Q  139 ttttcaatctgaagtgtaggggccatataggattttagtatgttatgttaacagtcggaatttgaatca--------tttatcgaactatttcaaacttc 230  Q
    |||||||||||||||    || ||||||||||||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||||    
T  43397185 ttttcaatctgaagt----ggaccatataggattttagtatgttatgttaatagtcggaatttgaatcatatatctctttatcgaactatttcaaacttc 43397280  T
Q  231 ttagttcatctc 242  Q
    ||||||||||||    
T  43397281 ttagttcatctc 43397292  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 27131731 - 27131678
Alignment:
Q  54 acattagtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgttg 107  Q
    ||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||    
T  27131731 acattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttg 27131678  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 7422153 - 7422216
Alignment:
Q  44 tgacacataaacattagtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgttg 107  Q
    ||||||||| ||||| ||||| |||| ||||||||| ||| |||||||||||| | ||||||||    
T  7422153 tgacacatagacatttgtaataatttgagaaaatagaagtgattgaatgtaattatatgtgttg 7422216  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 2468531 - 2468478
Alignment:
Q  54 acattagtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgttg 107  Q
    ||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||    
T  2468531 acattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttg 2468478  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 10338607 - 10338655
Alignment:
Q  51 taaacattagtaatcatttaagaaaatagtagtaattgaatgtaatcac 99  Q
    ||||||||  |||| |||||||||||||| ||| |||||||||||||||    
T  10338607 taaacattgataataatttaagaaaatagaagtgattgaatgtaatcac 10338655  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 36552325 - 36552252
Alignment:
Q  35 atacgacaatgacacataaacattagtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgttgt 108  Q
    |||||||||||||||||| |||| |||||||||| || |||| || | || ||||||| |||||| ||||||||    
T  36552325 atacgacaatgacacatagacataagtaatcattaaaaaaaacagaaatacttgaatgaaatcacgtgtgttgt 36552252  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 2445500 - 2445459
Alignment:
Q  60 gtaatcatttaagaaaatagtagtaattgaatgtaatcacat 101  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  2445500 gtaatcatttaagaaaatggaagtgattgaatgtaatcacat 2445459  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 18542264 - 18542218
Alignment:
Q  59 agtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgt 105  Q
    |||||| |||| ||||||||  |||||||||||||||||||||||||    
T  18542264 agtaataatttgagaaaatacaagtaattgaatgtaatcacatgtgt 18542218  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 12976706 - 12976658
Alignment:
Q  59 agtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgttg 107  Q
    |||||| |||||||||||||  ||| | |||||||||||||||||||||    
T  12976706 agtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtgttg 12976658  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 28735887 - 28735820
Alignment:
Q  37 acgacaatgacacataaacattagtaatcatttaagaaaatagtagtaattgaatgtaatcacatgtgt 105  Q
    |||||| ||||||||| ||| | ||||| |||||||||||||| ||| |||||||||||| | ||||||    
T  28735887 acgacactgacacatagacact-gtaataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 18992512 - 18992471
Alignment:
Q  54 acattagtaatcatttaagaaaatagtagtaattgaatgtaa 95  Q
    ||||||||||| |||| |||||||| ||||||||||||||||    
T  18992512 acattagtaataattttagaaaataatagtaattgaatgtaa 18992471  T

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