View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_54 (Length: 237)
Name: NF15322_low_54
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 52380225 - 52380386
Alignment:
| Q |
1 |
agccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacataaggcaaagaaagatattatgcgtcctttcatt |
100 |
Q |
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| T |
52380225 |
agccttgtggcggtggggattagataccaattcccactgttatagtcattatattcggtaacaacatgaggcaaagaaagatattatgcgtcctttcatt |
52380324 |
T |
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| Q |
101 |
caagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
162 |
Q |
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| T |
52380325 |
caagctagatagcgagataactctagaatcattatctcgtcacttatttttgcaacttgagg |
52380386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 52380400 - 52380438
Alignment:
| Q |
183 |
ctacttactcttttttctcgatcacatcattatattcat |
221 |
Q |
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| T |
52380400 |
ctacttactcttttttctcgatcacatcattatattcat |
52380438 |
T |
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