View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_55 (Length: 228)
Name: NF15322_low_55
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_55 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1107819 - 1107622
Alignment:
| Q |
20 |
aatggcatactcaggagccatataaccactg--aaaaaaccacaaatgagtaaatttaaattgaaaatat---tgtaaatgacttaaagatgttaatgaa |
114 |
Q |
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| T |
1107819 |
aatggcatactcgggagccatataaccactggaaaaaaattacaaatgagttaatttgaattaaaaaaaaaaatctaaatgacttaaagatatcaatgaa |
1107720 |
T |
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| Q |
115 |
aatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatattttcgggttcat |
212 |
Q |
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| T |
1107719 |
agtacttactgtgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatattttcgggttcat |
1107622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1077583 - 1077391
Alignment:
| Q |
20 |
aatggcatactcaggagccatataaccactgaaaaaaccacaaatgagtaaatttaaattgaaaatattgtaaatgacttaaagatgttaatgaaaatac |
119 |
Q |
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| T |
1077583 |
aatggcatattctggagccatataaccactgaaaagtttacaaatgagttaatttgaattattttttctttcaataacttaaaaatatcaatgaaactac |
1077484 |
T |
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| Q |
120 |
ttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatattttcgggttcat |
212 |
Q |
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| T |
1077483 |
ttactgtgttccaactactctgtttgtattcccctcaacttgatcatccccacaaatttttgccaagccaaaatctgatatttttggattcat |
1077391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 1091334 - 1091240
Alignment:
| Q |
109 |
aatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatatttt |
203 |
Q |
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| T |
1091334 |
aatgaaactacttactgtgttccaactactctttttgtattcccctcaacttgatcatccccacaaatttttgccaagccaaaatctgatatttt |
1091240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 1050591 - 1050497
Alignment:
| Q |
109 |
aatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatatttt |
203 |
Q |
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| T |
1050591 |
aatgaaactacttactgtgttccaaccactctttttgtattcccttcaacttgatcatccccacaaatttttgccaagccaaaatctgatatttt |
1050497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 8225 - 8321
Alignment:
| Q |
116 |
atacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatattttcgggttcat |
212 |
Q |
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| T |
8225 |
atacttactatgtgccaacgattctgtttgttctcccctcaatttgatcacctccacacattctagccatgccaaaatctgaaattttgggattcat |
8321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 40125826 - 40125858
Alignment:
| Q |
24 |
gcatactcaggagccatataaccactgaaaaaa |
56 |
Q |
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| T |
40125826 |
gcatactcaggagccatataaccactgcaaaaa |
40125858 |
T |
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