View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_57 (Length: 217)

Name: NF15322_low_57
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_57
NF15322_low_57
[»] chr4 (39 HSPs)
chr4 (67-211)||(28224226-28224370)
chr4 (3-53)||(2004215-2004265)
chr4 (9-51)||(50721777-50721819)
chr4 (9-48)||(32012896-32012935)
chr4 (1-47)||(41262369-41262415)
chr4 (9-49)||(7632494-7632534)
chr4 (10-50)||(22257229-22257269)
chr4 (9-49)||(51255745-51255785)
chr4 (3-50)||(624338-624385)
chr4 (9-48)||(5932796-5932835)
chr4 (10-49)||(33278674-33278713)
chr4 (10-49)||(42853938-42853977)
chr4 (10-49)||(44272843-44272882)
chr4 (9-52)||(45082977-45083019)
chr4 (12-50)||(19473979-19474017)
chr4 (3-49)||(22819648-22819694)
chr4 (10-52)||(35017149-35017191)
chr4 (10-48)||(44925163-44925201)
chr4 (3-49)||(50831782-50831828)
chr4 (9-50)||(1796364-1796405)
chr4 (11-52)||(5386380-5386421)
chr4 (1-50)||(10762526-10762575)
chr4 (11-48)||(22786661-22786698)
chr4 (3-48)||(24045244-24045289)
chr4 (12-53)||(27001444-27001485)
chr4 (11-52)||(48494935-48494976)
chr4 (9-50)||(51377325-51377366)
chr4 (9-50)||(55268033-55268074)
chr4 (1-49)||(3316349-3316397)
chr4 (10-50)||(4914904-4914944)
chr4 (9-49)||(5208359-5208399)
chr4 (7-51)||(15638158-15638202)
chr4 (3-51)||(30079843-30079891)
chr4 (3-51)||(39345006-39345054)
chr4 (9-49)||(44626604-44626644)
chr4 (10-50)||(47014937-47014977)
chr4 (9-49)||(50890106-50890145)
chr4 (9-53)||(51359822-51359866)
chr4 (9-49)||(56557732-56557772)
[»] chr5 (30 HSPs)
chr5 (3-50)||(42446317-42446364)
chr5 (9-49)||(32872930-32872970)
chr5 (2-51)||(844033-844082)
chr5 (9-49)||(611863-611903)
chr5 (9-49)||(13089814-13089854)
chr5 (2-50)||(34270543-34270591)
chr5 (9-48)||(4719650-4719689)
chr5 (9-48)||(21155987-21156026)
chr5 (10-49)||(29803224-29803263)
chr5 (10-49)||(34428159-34428198)
chr5 (9-51)||(13309879-13309921)
chr5 (3-49)||(30838391-30838437)
chr5 (3-48)||(2629818-2629863)
chr5 (3-48)||(4800528-4800573)
chr5 (3-48)||(8728607-8728652)
chr5 (9-50)||(9594476-9594517)
chr5 (9-50)||(17097834-17097875)
chr5 (3-48)||(35099031-35099076)
chr5 (3-48)||(41621954-41621999)
chr5 (9-50)||(43057433-43057474)
chr5 (9-49)||(1274357-1274396)
chr5 (1-49)||(8675457-8675505)
chr5 (1-49)||(9977118-9977166)
chr5 (9-49)||(11148510-11148550)
chr5 (9-49)||(14780453-14780493)
chr5 (9-49)||(18660758-18660797)
chr5 (9-49)||(19844341-19844381)
chr5 (1-49)||(23126367-23126415)
chr5 (9-49)||(27487886-27487926)
chr5 (1-61)||(33620595-33620655)
[»] chr2 (32 HSPs)
chr2 (3-50)||(18510673-18510720)
chr2 (1-51)||(35589411-35589461)
chr2 (3-48)||(31629604-31629649)
chr2 (9-49)||(14876956-14876996)
chr2 (3-51)||(18176937-18176985)
chr2 (9-49)||(37731232-37731272)
chr2 (3-51)||(39234206-39234254)
chr2 (10-49)||(1352387-1352426)
chr2 (9-48)||(9990691-9990729)
chr2 (10-49)||(14140370-14140409)
chr2 (9-48)||(22303203-22303242)
chr2 (2-48)||(15123961-15124007)
chr2 (3-49)||(28481780-28481826)
chr2 (7-49)||(29168724-29168766)
chr2 (1-51)||(37077786-37077836)
chr2 (10-51)||(6884907-6884948)
chr2 (9-54)||(20974347-20974392)
chr2 (3-48)||(24727616-24727661)
chr2 (3-48)||(25507255-25507300)
chr2 (9-54)||(36909875-36909920)
chr2 (9-50)||(43057062-43057103)
chr2 (1-49)||(1040434-1040482)
chr2 (14-50)||(2308359-2308395)
chr2 (10-50)||(4036909-4036949)
chr2 (11-51)||(9647141-9647180)
chr2 (1-53)||(13453979-13454031)
chr2 (9-49)||(14871846-14871886)
chr2 (9-49)||(18531600-18531640)
chr2 (9-49)||(27490763-27490802)
chr2 (2-50)||(37767791-37767839)
chr2 (10-50)||(37966365-37966405)
chr2 (9-49)||(38821365-38821405)
[»] chr3 (24 HSPs)
chr3 (3-48)||(25188491-25188536)
chr3 (9-49)||(32146018-32146058)
chr3 (9-51)||(38944173-38944215)
chr3 (9-49)||(50559244-50559284)
chr3 (3-50)||(28419240-28419287)
chr3 (10-49)||(32362932-32362971)
chr3 (10-49)||(45528975-45529014)
chr3 (3-50)||(50206996-50207043)
chr3 (3-49)||(25641597-25641642)
chr3 (11-49)||(28700471-28700509)
chr3 (3-49)||(39671124-39671170)
chr3 (9-50)||(10811133-10811174)
chr3 (3-48)||(24482989-24483034)
chr3 (10-51)||(36869870-36869911)
chr3 (9-50)||(41637312-41637353)
chr3 (1-50)||(44677508-44677557)
chr3 (9-49)||(9862532-9862572)
chr3 (3-51)||(26645023-26645071)
chr3 (9-49)||(30400188-30400228)
chr3 (9-49)||(32931950-32931990)
chr3 (9-49)||(34456789-34456829)
chr3 (9-49)||(36818955-36818995)
chr3 (10-50)||(38957534-38957573)
chr3 (9-49)||(49417574-49417614)
[»] chr7 (31 HSPs)
chr7 (9-50)||(22195162-22195203)
chr7 (9-48)||(22605359-22605398)
chr7 (11-50)||(45420083-45420122)
chr7 (9-50)||(2008890-2008931)
chr7 (9-50)||(41018661-41018702)
chr7 (3-48)||(43573569-43573614)
chr7 (9-49)||(12007218-12007258)
chr7 (10-50)||(40693561-40693601)
chr7 (10-50)||(44649359-44649399)
chr7 (9-49)||(47448825-47448865)
chr7 (2-49)||(21822624-21822671)
chr7 (3-50)||(33057377-33057424)
chr7 (3-49)||(13162918-13162964)
chr7 (3-49)||(13729725-13729771)
chr7 (11-49)||(26749016-26749053)
chr7 (10-48)||(32777740-32777778)
chr7 (9-55)||(38344753-38344799)
chr7 (9-51)||(40417772-40417814)
chr7 (3-49)||(48395247-48395293)
chr7 (3-52)||(10700212-10700261)
chr7 (9-50)||(13152591-13152631)
chr7 (1-50)||(22623386-22623435)
chr7 (10-51)||(45154573-45154613)
chr7 (10-50)||(10656630-10656670)
chr7 (11-51)||(27570352-27570392)
chr7 (9-49)||(30061280-30061320)
chr7 (9-49)||(30864449-30864489)
chr7 (9-49)||(33845041-33845081)
chr7 (9-49)||(37352109-37352149)
chr7 (9-45)||(37385265-37385301)
chr7 (11-47)||(38547313-38547349)
[»] chr1 (30 HSPs)
chr1 (9-49)||(9987950-9987990)
chr1 (9-52)||(17082775-17082818)
chr1 (9-50)||(9566993-9567034)
chr1 (9-49)||(6829815-6829855)
chr1 (9-49)||(27742616-27742656)
chr1 (3-51)||(33024597-33024645)
chr1 (9-49)||(48858822-48858862)
chr1 (9-49)||(48983700-48983740)
chr1 (10-50)||(49647183-49647223)
chr1 (9-49)||(50148945-50148985)
chr1 (3-50)||(1852977-1853024)
chr1 (9-52)||(7371980-7372023)
chr1 (9-48)||(19947773-19947812)
chr1 (11-49)||(3826838-3826876)
chr1 (3-49)||(35883633-35883679)
chr1 (11-49)||(37843466-37843504)
chr1 (15-49)||(49065402-49065436)
chr1 (8-49)||(2269591-2269632)
chr1 (9-50)||(34008178-34008219)
chr1 (3-48)||(35136844-35136889)
chr1 (3-48)||(36577438-36577483)
chr1 (9-50)||(47214206-47214247)
chr1 (10-50)||(3697176-3697216)
chr1 (9-49)||(4213071-4213111)
chr1 (9-49)||(15083083-15083122)
chr1 (9-49)||(24673068-24673108)
chr1 (9-49)||(24806254-24806294)
chr1 (9-49)||(32915104-32915144)
chr1 (9-49)||(35529412-35529452)
chr1 (9-53)||(45333565-45333608)
[»] chr8 (29 HSPs)
chr8 (3-50)||(4671989-4672036)
chr8 (1-48)||(34018808-34018855)
chr8 (3-49)||(2730987-2731033)
chr8 (3-49)||(5771998-5772044)
chr8 (9-49)||(1068605-1068645)
chr8 (9-49)||(34435769-34435809)
chr8 (9-48)||(5601019-5601058)
chr8 (9-48)||(5639562-5639601)
chr8 (9-48)||(7598708-7598747)
chr8 (9-48)||(26026896-26026935)
chr8 (10-49)||(33107900-33107939)
chr8 (3-49)||(5771902-5771948)
chr8 (9-47)||(10839514-10839552)
chr8 (3-49)||(13592765-13592811)
chr8 (3-49)||(26629136-26629182)
chr8 (3-49)||(30170755-30170801)
chr8 (1-47)||(45108681-45108727)
chr8 (9-50)||(5849598-5849639)
chr8 (11-52)||(16487606-16487647)
chr8 (3-48)||(16872182-16872227)
chr8 (10-47)||(40528749-40528786)
chr8 (3-51)||(16966782-16966830)
chr8 (9-49)||(20288532-20288572)
chr8 (9-49)||(21075161-21075201)
chr8 (9-49)||(28772156-28772196)
chr8 (3-51)||(30136041-30136089)
chr8 (1-49)||(33605102-33605150)
chr8 (11-47)||(39211054-39211090)
chr8 (9-49)||(41746819-41746859)
[»] chr6 (19 HSPs)
chr6 (3-49)||(17551405-17551451)
chr6 (3-51)||(30036820-30036868)
chr6 (15-50)||(30457432-30457467)
chr6 (9-48)||(33712320-33712359)
chr6 (9-47)||(24900776-24900814)
chr6 (3-49)||(30423621-30423667)
chr6 (3-49)||(31883330-31883376)
chr6 (11-48)||(1286923-1286960)
chr6 (11-48)||(32644623-32644660)
chr6 (9-54)||(34442095-34442140)
chr6 (10-47)||(35077124-35077161)
chr6 (3-48)||(35213587-35213632)
chr6 (9-49)||(8505806-8505846)
chr6 (9-49)||(8645308-8645347)
chr6 (9-53)||(9699362-9699405)
chr6 (10-50)||(9954546-9954586)
chr6 (10-50)||(17902725-17902765)
chr6 (9-49)||(27334857-27334897)
chr6 (9-49)||(27395597-27395637)
[»] scaffold0321 (1 HSPs)
scaffold0321 (3-52)||(19632-19681)
[»] scaffold0087 (1 HSPs)
scaffold0087 (11-48)||(24561-24598)
[»] scaffold0662 (1 HSPs)
scaffold0662 (10-50)||(1076-1116)
[»] scaffold0128 (1 HSPs)
scaffold0128 (9-49)||(10935-10975)
[»] scaffold0110 (1 HSPs)
scaffold0110 (9-49)||(28359-28399)
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-51)||(34405-34445)
[»] scaffold0034 (1 HSPs)
scaffold0034 (9-49)||(101938-101978)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 28224226 - 28224370
Alignment:
Q  67 tgatacttatagaatctctaccttcacgtgtacctaaacttgaatcactcattcaaaataaggttagccagagaaccctagctacattacgtgacagaga 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28224226 tgatacttatagaatctctaccttcacgtgtacctaaacttgaatcactcattcaaaataaggttagccagagaaccctagctacattacgtgacagaga 28224325  T
Q  167 tataaaatattaacaaataagctttgagtttccacttcatctctc 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  28224326 tataaaatattaacaaataagctttgagtttccacttcatttctc 28224370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2004215 - 2004265
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  2004215 ttgttgcaaaagttgttaaaaaatggttgttcaaatatcatttctctatat 2004265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 50721777 - 50721819
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  50721777 caaaagttgtcaaaaattggttgttcaaatatcatttctctat 50721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32012935 - 32012896
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  32012935 caaaagttgtcaaaaattggttgttcaaatatcatttctc 32012896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41262369 - 41262415
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||    
T  41262369 aattgttgcaaaaattgtcaaaaaatagttgtttaaatatcatttct 41262415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7632494 - 7632534
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  7632494 caaaagttgtcaaaaattgattgttcaaatatcatttctct 7632534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 22257229 - 22257269
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  22257229 aaaagttgtcacaaagtagttgttcaaatatcatttctcta 22257269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 51255785 - 51255745
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  51255785 caaaagttgtcaaaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 624338 - 624385
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||||    
T  624338 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctcta 624385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 5932796 - 5932835
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  5932796 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 5932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 33278713 - 33278674
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  33278713 aaaagttgtcacaaaatagttgttcaaatatcatttctct 33278674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 42853977 - 42853938
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcatttctct 42853938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 44272843 - 44272882
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcatttctct 44272882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 45083019 - 45082977
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
T  45083019 caaaagttgtcaaaaatg-gttgttcaaatatcatttctctata 45082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 19473979 - 19474017
Alignment:
Q  12 aagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  19473979 aagttgtcaaaaaatggttgttcaaatatcatttctcta 19474017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 22819694 - 22819648
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||| ||| | | ||||||||||||||||||||    
T  22819694 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctct 22819648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 35017191 - 35017149
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||    
T  35017191 aaaagttgtcacaaaatagttgtacaaatatcatttctctata 35017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 44925163 - 44925201
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  44925163 aaaagttgtcaaaaagtggttgttcaaatatcatttctc 44925201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 50831782 - 50831828
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  50831782 ttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctct 50831828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 1796405 - 1796364
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||||| ||||| |||||||||||||||||    
T  1796405 caaaagttgtcacaaattggttgtacaaatatcatttctcta 1796364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 5386421 - 5386380
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    |||||||||||||| | |||||||||||||||||||| ||||    
T  5386421 aaagttgtcaaaaaatggttgttcaaatatcatttctgtata 5386380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10762526 - 10762575
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||| |||||||| ||||||| |||||||  ||||||||||||||||    
T  10762526 aattgtttcaaaagttatcaaaaagtagttgtataaatatcatttctcta 10762575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 22786698 - 22786661
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  22786698 aaagttgtcaaaatttagttgtacaaatatcatttctc 22786661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 24045289 - 24045244
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||    
T  24045289 ttgtcgcaaaagttgtaaaaaattggttgtgcaaatatcatttctc 24045244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 27001444 - 27001485
Alignment:
Q  12 aagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||    
T  27001444 aagttgtcacaaattggttgtacaaatatcatttctctatat 27001485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 48494935 - 48494976
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    |||||||| ||||| | |||||||||||||||||||||||||    
T  48494935 aaagttgttaaaaagtggttgttcaaatatcatttctctata 48494976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 51377325 - 51377366
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||||| ||||| |||||||||||||||||    
T  51377325 caaaagttgtcacaaattggttgtacaaatatcatttctcta 51377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 55268033 - 55268074
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||||| ||||| |||||||||||||||||    
T  55268033 caaaagttgtcacaaattggttgtacaaatatcatttctcta 55268074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3316397 - 3316349
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||| |||||||||||||||| | ||| |||||| |||||||||||    
T  3316397 aattgttacaaaagttgtcaaaaaatggttattcaaaaatcatttctct 3316349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 4914944 - 4914904
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||| |||||| ||| |||||||||||||||||||||||||    
T  4914944 aaaaattgtcacaaaatagttgttcaaatatcatttctcta 4914904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5208359 - 5208399
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  5208359 caaaagttgtcacaaattggttgtacaaatatcatttctct 5208399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 15638202 - 15638158
Alignment:
Q  7 tgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||||||| |  |||| ||||||||||||||||||    
T  15638202 tgcaaaagttgtcaaaaaatgattgtacaaatatcatttctctat 15638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 30079891 - 30079843
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || | | ||||||||||||||||||||||    
T  30079891 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctctat 30079843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39345006 - 39345054
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||| |||||| ||| | | ||||||||||||||||||||||    
T  39345006 ttgttgcaaaaattgtcacaaaatggatgttcaaatatcatttctctat 39345054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 44626644 - 44626604
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  44626644 caaaagttatcataaaatagttgttcaaatatcatttctct 44626604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 47014977 - 47014937
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  47014977 aaaagttgtcacaaaatagttgtacaaatatcatttctcta 47014937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 50890106 - 50890145
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  50890106 caaaagttgtcaaaaat-agttgtacaaatatcatttctct 50890145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 51359822 - 51359866
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    |||||||||||| ||| | ||||| ||||||||||||||||||||    
T  51359822 caaaagttgtcacaaaatggttgtacaaatatcatttctctatat 51359866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 56557772 - 56557732
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  56557772 caaaagttgtcataaaattgttgttcaaatatcatttctct 56557732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 42446317 - 42446364
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  42446317 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctcta 42446364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 32872930 - 32872970
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  32872930 caaaagttgtcaaaaaatagttgttcaaatatcatttctct 32872970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 844082 - 844033
Alignment:
Q  2 attgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  844082 attgtttcaaaagttgtcaaaaaatggttgtgcaaatatcatttctctat 844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 611903 - 611863
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  611903 caaaagttgtcaaaaagtaattgttcaaatatcatttctct 611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 13089814 - 13089854
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  13089814 caaaagttgtcaaaaaatggttgttcaaatatcatttctct 13089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 34270543 - 34270591
Alignment:
Q  2 attgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||||||    
T  34270543 attgtttcaaaagttgttaaaaatttgttgtacaaatatcatttctcta 34270591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 4719689 - 4719650
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  4719689 caaaagttgtcaaaaattggttgtacaaatatcatttctc 4719650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 21156026 - 21155987
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  21156026 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 21155987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29803263 - 29803224
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcatttctct 29803224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 34428198 - 34428159
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcatttctct 34428159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 13309921 - 13309879
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||| |||||||||| |||||||||||||||||||| |||||    
T  13309921 caaaaattgtcaaaaaatagttgttcaaatatcatttttctat 13309879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 30838391 - 30838437
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  30838391 ttgtttcaaaagttgtcaaaaagtagatgtacaaatatcatttctct 30838437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 2629863 - 2629818
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  2629863 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 4800528 - 4800573
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| |||||||  ||||||||||||||    
T  4800528 ttgttccaaaagttgtcaaaaagtagttgtataaatatcatttctc 4800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 8728607 - 8728652
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  8728607 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9594517 - 9594476
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||||| ||||| |||||||||||||||||    
T  9594517 caaaagttgtcacaaattggttgtacaaatatcatttctcta 9594476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 17097834 - 17097875
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  17097834 caaaagttatcaaaaaatggttgttcaaatatcatttctcta 17097875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 35099031 - 35099076
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||    
T  35099031 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctc 35099076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 41621954 - 41621999
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  41621954 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 41621999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 43057474 - 43057433
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  43057474 caaaagttgtcaaaaagtggttgtacaaatatcatttctcta 43057433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 1274396 - 1274357
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  1274396 caaaagttgtcaaaaatg-gttgttcaaatatcatttctct 1274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8675457 - 8675505
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||| ||| | | ||||||||||||||||||||    
T  8675457 aattgttgcaaaagttatcacaaaatggatgttcaaatatcatttctct 8675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9977166 - 9977118
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||||  || | | ||||||||||||||||||||    
T  9977166 aattgttgcaaaagttgtcactaaatggatgttcaaatatcatttctct 9977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11148550 - 11148510
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  11148550 caaaagttgtcaaaaattgattgtacaaatatcatttctct 11148510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 14780453 - 14780493
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  14780453 caaaagttgtcaaaaagtagatgtacaaatatcatttctct 14780493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18660797 - 18660758
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  18660797 caaaagttgtcaaaaatg-gttgttcaaatatcatttctct 18660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 19844341 - 19844381
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  19844341 caaaagttatcaaaaaatagttgtacaaatatcatttctct 19844381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23126367 - 23126415
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||||  || | | ||||||||||||||||||||    
T  23126367 aattgttgcaaaagttgtcactaaatggatgttcaaatatcatttctct 23126415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27487926 - 27487886
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  27487926 caaaagttgttaaaaattgattgttcaaatatcatttctct 27487886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33620655 - 33620595
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctatatacattatc 61  Q
    ||||||||||||||||||||  || | | | |||||||||||||||||| ||| |||||||    
T  33620655 aattgttgcaaaagttgtcactaaatggatattcaaatatcatttctctttattcattatc 33620595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 18510720 - 18510673
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  18510720 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctcta 18510673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35589411 - 35589461
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||||||||| ||| | | ||||||||||||||||||||||    
T  35589411 aattgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctctat 35589461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 31629649 - 31629604
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||    
T  31629649 ttgttccaaaagttgtcaaaaagtagttgtacaaatatcatttctc 31629604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 14876996 - 14876956
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  14876996 caaaagttgtcaaaaaatagttgttcacatatcatttctct 14876956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 18176985 - 18176937
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  18176985 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctctat 18176937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 37731232 - 37731272
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  37731232 caaaagttgtcaaaaagtggttgttcaaatatcatttctct 37731272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39234206 - 39234254
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  39234206 ttgttgcaaaagttatcaaaaaatggttgttcaaatatcgtttctctat 39234254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 1352426 - 1352387
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  1352426 aaaagttgtcaaaaattgattgttcaaatatcatttctct 1352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 9990729 - 9990691
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  9990729 caaaagttgt-aaaaattagttgttcaaatatcatttctc 9990691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 14140370 - 14140409
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  14140370 aaaagttgtcacaaattagttgtacaaatatcatttctct 14140409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 22303242 - 22303203
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  22303242 caaaagttgtcaaaaaatagttgtacaaatatcatttctc 22303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 15123961 - 15124007
Alignment:
Q  2 attgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||| |||||||||||||||| | ||||| |||||||||||||||    
T  15123961 attgtttcaaaagttgtcaaaaaatggttgtacaaatatcatttctc 15124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 28481826 - 28481780
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||||||||||| ||||||||    
T  28481826 ttgttccaaaagttgtcaaaaaatggttgttcaaatattatttctct 28481780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 29168766 - 29168724
Alignment:
Q  7 tgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||| | ||||| ||||||||||||||||    
T  29168766 tgcaaaagttgtcaaaaaatggttgtacaaatatcatttctct 29168724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37077836 - 37077786
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||| ||||| || ||||||| |||||||||||||||||||| |||||    
T  37077836 aattgttacaaaaattatcaaaaaatagttgttcaaatatcatttttctat 37077786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 6884948 - 6884907
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||    
T  6884948 aaaagttatcacaaattagttgtacaaatatcatttctctat 6884907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 20974392 - 20974347
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatata 54  Q
    |||||||||||| |||||||||||  ||||||||||||| ||||||    
T  20974392 caaaagttgtcacaaattagttgtaaaaatatcatttctatatata 20974347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 24727616 - 24727661
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  24727616 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 25507300 - 25507255
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||    
T  25507300 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 36909875 - 36909920
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatata 54  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||||    
T  36909875 caaaagttgtcacaaaatggttgtacaaatatcatttctctatata 36909920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 43057103 - 43057062
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||| ||||| | |||||||||||||||||||||||    
T  43057103 caaaagttgttaaaaagtggttgttcaaatatcatttctcta 43057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1040434 - 1040482
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||  ||||||||||| ||| ||||||||| ||||||||||||||    
T  1040434 aattgttataaaagttgtcataaaatagttgttcgaatatcatttctct 1040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 2308359 - 2308395
Alignment:
Q  14 gttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  2308359 gttgtcaaaaattggttgtacaaatatcatttctcta 2308395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 4036909 - 4036949
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||| ||||| ||||||| |||||||||||||||||    
T  4036909 aaaagttgttaaaaagtagttgtacaaatatcatttctcta 4036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 9647180 - 9647141
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  9647180 aaagttgtaaaaaat-agttgttcaaatatcatttctctat 9647141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13453979 - 13454031
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    ||||||| |||||||||||||||| |  |||| || |||||||||||||||||    
T  13453979 aattgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctctatat 13454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 14871886 - 14871846
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  14871886 caaaagttgtcaaaaaatggttgttcacatatcatttctct 14871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18531640 - 18531600
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  18531640 caaaaattgtcaaaaaatagttgtacaaatatcatttctct 18531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27490763 - 27490802
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  27490763 caaaagttgtcaaaaatg-gttgttcaaatatcatttctct 27490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 37767791 - 37767839
Alignment:
Q  2 attgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||| |||||||||||||||| | |||||  ||||||||||||||||    
T  37767791 attgtttcaaaagttgtcaaaaagtggttgtataaatatcatttctcta 37767839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 37966405 - 37966365
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  37966405 aaaagttgtcacaaattggttgtacaaatatcatttctcta 37966365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38821405 - 38821365
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  38821405 caaaagttgtcataaaatggttgttcaaatatcatttctct 38821365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25188491 - 25188536
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  25188491 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcatttctc 25188536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 32146018 - 32146058
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  32146018 caaaagttgtcaaaaaatagttgttcaaatatcatttctct 32146058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 38944173 - 38944215
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  38944173 caaaagttgtcacaaattagttgtacaaatatcatttctctat 38944215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 50559244 - 50559284
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  50559244 caaaagttgtcaaaaaatagttgtacaaatatcatttctct 50559284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 28419240 - 28419287
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| || || ||| |||||||||||||||||||||    
T  28419240 ttgttgcaaaagttgttaataaatagatgttcaaatatcatttctcta 28419287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 32362971 - 32362932
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  32362971 aaaagttgtcaaaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 45528975 - 45529014
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcatttctct 45529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 50206996 - 50207043
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||||    
T  50206996 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcta 50207043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 25641597 - 25641642
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||    
T  25641597 ttgtagcaaaagttgtcaaaaataa-ttgttcaaatatcatttctct 25641642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 28700509 - 28700471
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  28700509 aaagttgtcaaaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 39671124 - 39671170
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||    
T  39671124 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctct 39671170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 10811174 - 10811133
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||| | |||||||||||||||||||||||    
T  10811174 caaaagttgtcataaaatggttgttcaaatatcatttctcta 10811133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 24482989 - 24483034
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||    
T  24482989 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 24483034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 36869870 - 36869911
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||| | ||||| ||||||||||||||||||    
T  36869870 aaaagttgtcaaaaaatggttgtacaaatatcatttctctat 36869911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 41637312 - 41637353
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| ||||||| ||||||||| |||||||    
T  41637312 caaaagttgtcaaaaaatagttgtacaaatatcacttctcta 41637353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44677508 - 44677557
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||||||||||  || | | |||||||||||||||||||||    
T  44677508 aattgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcta 44677557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9862572 - 9862532
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||| |||||| | ||||||||||||||||||||||    
T  9862572 caaaagttgacaaaaaatggttgttcaaatatcatttctct 9862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 26645071 - 26645023
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||| ||||||||| ||| ||| ||| ||||||||||||||||||||||    
T  26645071 ttgtcgcaaaagttatcataaaataggtgttcaaatatcatttctctat 26645023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 30400188 - 30400228
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  30400188 caaaagttgtcacaaatttgttgtacaaatatcatttctct 30400228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 32931950 - 32931990
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  32931950 caaaagttgtcacaaattggttgtacaaatatcatttctct 32931990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34456829 - 34456789
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  34456829 caaaagttgtcaaaaagtggttattcaaatatcatttctct 34456789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 36818995 - 36818955
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  36818995 caaaagttgtcacaaattggttgtacaaatatcatttctct 36818955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 38957534 - 38957573
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  38957534 aaaagttgtcaaaaat-agttgtacaaatatcatttctcta 38957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 49417614 - 49417574
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  49417614 caaaagttgtcataaaatagatgttcaaatatcatttctct 49417574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 22195162 - 22195203
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  22195162 caaaagttgtcaaaaatcagttgttcaaatatcatttctcta 22195203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 22605398 - 22605359
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22605398 caaaagttgttaaaaattagttgttcaaatatcatttctc 22605359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 45420083 - 45420122
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  45420083 aaagttgtcaaaaaatagttgttcaaatatcatttctcta 45420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2008890 - 2008931
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  2008890 caaaagttgtcaaaaagtggttgttcaaatatcatttctcta 2008931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 41018702 - 41018661
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  41018702 caaaagttgtccaaaaatagttgttcaaatatcatttctcta 41018661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 43573569 - 43573614
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  43573569 ttgttgcaaaagttgtcacaaaatagatgttcaaatatcatttctc 43573614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 12007218 - 12007258
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  12007218 caaaagttgtcaaaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 40693561 - 40693601
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  40693561 aaaagttgtcaaaaaatagttgtacaaatatcatttctcta 40693601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 44649359 - 44649399
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  44649359 aaaaattgtcaaaaattggttgttcaaatatcatttctcta 44649399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 47448865 - 47448825
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  47448865 caaaagttgtcaaaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 21822624 - 21822671
Alignment:
Q  2 attgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| |||||| ||| ||| ||||||||||||||||||||    
T  21822624 attgttgcaaaaattgtcacaaaatagatgttcaaatatcatttctct 21822671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 33057424 - 33057377
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  33057424 ttgttacaaaagttgttaaaaaatagttgttcaaatatcatttttcta 33057377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13162964 - 13162918
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||    
T  13162964 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctct 13162918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13729771 - 13729725
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||| ||| | | ||||||||||||||||||||    
T  13729771 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctct 13729725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 26749053 - 26749016
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  26749053 aaagttgtcaaaaatt-gttgttcaaatatcatttctct 26749016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 32777740 - 32777778
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  32777740 aaaagttgtcaaaaaatggttgttcaaatatcatttctc 32777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 38344799 - 38344753
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatatac 55  Q
    ||||||||||||||||||  |||||||||||| |||||||| |||||    
T  38344799 caaaagttgtcaaaaattgattgttcaaatataatttctctttatac 38344753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 40417814 - 40417772
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  40417814 caaaaattgtcaaaaaatagttgttcaaatattatttctctat 40417772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 48395293 - 48395247
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  48395293 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 48395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10700212 - 10700261
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    ||||| |||||||| ||||||| | ||||| |||||||||||||||||||    
T  10700212 ttgttacaaaagttatcaaaaagtggttgtgcaaatatcatttctctata 10700261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 13152631 - 13152591
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  13152631 caaaagttgtcaaaaatg-gttgttcaaatatcatttctcta 13152591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22623435 - 22623386
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||| ||||||||| ||||||| | ||||||||||||||||| |||||    
T  22623435 aattgtcgcaaaagttatcaaaaaatggttgttcaaatatcattcctcta 22623386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 45154573 - 45154613
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  45154573 aaaagttgtcaaaaat-agttgtacaaatatcatttctctat 45154613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 10656670 - 10656630
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  10656670 aaaagttgtcagaaattggttgtacaaatatcatttctcta 10656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27570392 - 27570352
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||| | ||||| ||||||||||||||||||||||||||    
T  27570392 aaagttattaaaaaatagttgttcaaatatcatttctctat 27570352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 30061320 - 30061280
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||| |||||||| |||||||||||||||    
T  30061320 caaaaattgtcaaaaaatagttgttaaaatatcatttctct 30061280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 30864449 - 30864489
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  30864449 caaaagttgtcacaaattggttgtacaaatatcatttctct 30864489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 33845081 - 33845041
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  33845081 caaaagttgtcaaaaagtggttattcaaatatcatttctct 33845041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 37352149 - 37352109
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  37352149 caaaaattgtcaaaaaatggttgttcaaatatcatttctct 37352109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 37385265 - 37385301
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  37385265 caaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 38547313 - 38547349
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9987990 - 9987950
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  9987990 caaaagttgtcaaaaattggttgttcaaatatcatttctct 9987950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 17082775 - 17082818
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  17082775 caaaagttgtcaaaaagtagttgttcaaatattatttctctata 17082818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 9566993 - 9567034
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  9566993 caaaagttgtcaaaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 6829815 - 6829855
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  6829815 caaaagttgtcacaaattagttgtacaaatatcatttctct 6829855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27742656 - 27742616
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  27742656 caaaagttgtcaaaaagtggttgttcaaatatcatttctct 27742616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33024597 - 33024645
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  33024597 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctctat 33024645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 48858862 - 48858822
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  48858862 caaaagttgtcaaaaagtggttgttcaaatatcatttctct 48858822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 48983700 - 48983740
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  48983700 caaaagttgtcaaaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 49647183 - 49647223
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  49647183 aaaaattgtcaaaaaatagttgttcaaatatcatttctcta 49647223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 50148985 - 50148945
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  50148985 caaaagttgtcaaaaattggttgttcaaatatcgtttctct 50148945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 1852977 - 1853024
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||||||||||  || ||| |||||||||||||||||||||    
T  1852977 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctcta 1853024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 7371980 - 7372023
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||    
T  7371980 caaaaattgtcataaattagttgtacaaatatcatttctctata 7372023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 19947773 - 19947812
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  19947773 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 19947812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 3826838 - 3826876
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  3826838 aaagttgttaaaaattagttgtacaaatatcatttctct 3826876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 35883633 - 35883679
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| || |||| ||||||||||||||||    
T  35883633 ttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctct 35883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 37843466 - 37843504
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  37843466 aaagttgtcaaaaagtagttgtacaaatatcatttctct 37843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 49065402 - 49065436
Alignment:
Q  15 ttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||| ||||||||||||||||||||||||    
T  49065402 ttgtcaaaaaatagttgttcaaatatcatttctct 49065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 2269591 - 2269632
Alignment:
Q  8 gcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  2269591 gcaaaagttatcaaaaaatagttgttcatatatcatttctct 2269632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34008219 - 34008178
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  34008219 caaaagttgtcataaaatagatgttcaaatatcatttctcta 34008178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 35136889 - 35136844
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||    
T  35136889 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 35136844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36577438 - 36577483
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||    
T  36577438 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 36577483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 47214247 - 47214206
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  47214247 caaaagttgtcataaaatagatgttcaaatatcatttctcta 47214206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 3697176 - 3697216
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||| || ||||||| |||||||||||||||||    
T  3697176 aaaagttgtcaacaaatagttgtacaaatatcatttctcta 3697216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 4213111 - 4213071
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  4213111 caaaagttatcaaaaaatggttgttcaaatatcatttctct 4213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 15083083 - 15083122
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  15083083 caaaagttgtcaaaaatg-gttgttcaaatatcatttctct 15083122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 24673108 - 24673068
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  24673108 caaaagttgtcataaaatagatgttcaaatatcatttctct 24673068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 24806254 - 24806294
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  24806254 caaaagttgtcaaaaagtggttattcaaatatcatttctct 24806294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 32915104 - 32915144
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  32915104 caaaagttgtcataaaatagatgttcaaatatcatttctct 32915144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 35529412 - 35529452
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  35529412 caaaagttgtctaaaatcggttgttcaaatatcatttctct 35529452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 45333608 - 45333565
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    |||||||||| |||||| | |||||||||||||||||||||||||    
T  45333608 caaaagttgtaaaaaatga-ttgttcaaatatcatttctctatat 45333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 4672036 - 4671989
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||    
T  4672036 ttgttgcaaaagttgtcaaaaaatggttgttcaaatatcgtttctcta 4671989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34018855 - 34018808
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||    
T  34018855 aattgttgcaaaagttgtcagaaaatggttgttcaaatatcatttctc 34018808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 2730987 - 2731033
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  2730987 ttgttacaaaagttgtcaaaaagtggttgttcaaatatcatttctct 2731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5771998 - 5772044
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  5771998 ttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 5772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 1068645 - 1068605
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  1068645 caaaagttgtcaaaaagtggttgttcaaatatcatttctct 1068605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 34435769 - 34435809
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  34435769 caaaagttgtcaaaaagtggttgttcaaatatcatttctct 34435809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 5601019 - 5601058
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  5601019 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 5601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 5639601 - 5639562
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  5639601 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 5639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 7598747 - 7598708
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  7598747 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 7598708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 26026935 - 26026896
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  26026935 caaaagttgtcaaaaaatggttgttcaaatatcatttctc 26026896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 33107900 - 33107939
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  33107900 aaaagttgtcaaaaagtggttgttcaaatatcatttctct 33107939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5771902 - 5771948
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||| ||| | ||||||||||||||||||||||    
T  5771902 ttgttacaaaagttgtcacaaaatggttgttcaaatatcatttctct 5771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 10839514 - 10839552
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  10839514 caaaagttgttaaaaattggttgttcaaatatcatttct 10839552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13592811 - 13592765
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  13592811 ttgtttcaaaagttgtcaaaaaataggtgtacaaatatcatttctct 13592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 26629136 - 26629182
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  26629136 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 30170755 - 30170801
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  30170755 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 30170801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45108681 - 45108727
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  45108681 aattgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttct 45108727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5849598 - 5849639
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  5849598 caaaagttatcaaaaaatggttgttcaaatatcatttctcta 5849639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 16487647 - 16487606
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    |||||||||| ||| | |||||||||||||||||||||||||    
T  16487647 aaagttgtcataaaatggttgttcaaatatcatttctctata 16487606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 16872182 - 16872227
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||||| ||| | | |||||||||||||||||||    
T  16872182 ttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctc 16872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 40528786 - 40528749
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  40528786 aaaagttgtcacaaaatagttgttcaaatatcatttct 40528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 16966830 - 16966782
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || | | ||||||||||||||||||||||    
T  16966830 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctctat 16966782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20288572 - 20288532
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  20288572 caaaagttgtcacaaattggttgtacaaatatcatttctct 20288532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21075201 - 21075161
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  21075201 caaaagttgtcacaaattggttgtacaaatatcatttctct 21075161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 28772156 - 28772196
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  28772156 caaaaattgtcaaaaaatggttgttcaaatatcatttctct 28772196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 30136041 - 30136089
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || ||  ||||||||||||||||||||||    
T  30136041 ttgttgcaaaagttgtcattaaataaatgttcaaatatcatttctctat 30136089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33605102 - 33605150
Alignment:
Q  1 aattgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||||| |||||||| ||| ||| | ||||||||||||||||||||||    
T  33605102 aattgttccaaaagttatcataaaatggttgttcaaatatcatttctct 33605150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 39211090 - 39211054
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    |||||||||||||| | ||||||||||||||||||||    
T  39211090 aaagttgtcaaaaaatggttgttcaaatatcatttct 39211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 41746859 - 41746819
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  41746859 caaaagttgtcacagattagttgtacaaatatcatttctct 41746819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 17551405 - 17551451
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  17551405 ttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 17551451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 30036820 - 30036868
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    ||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  30036820 ttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctctat 30036868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 30457467 - 30457432
Alignment:
Q  15 ttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    |||||||||| |||||||||||||||||||||||||    
T  30457467 ttgtcaaaaaatagttgttcaaatatcatttctcta 30457432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 33712359 - 33712320
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  33712359 caaaagttgtcaaaaagtggttgttcaaatatcatttctc 33712320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 24900814 - 24900776
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  24900814 caaaagttgtcaaaaaatggttgttcaaatatcatttct 24900776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 30423621 - 30423667
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||| ||||||||| || |||||||||||||||||||||    
T  30423621 ttgttacaaaagctgtcaaaaaataattgttcaaatatcatttctct 30423667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 31883330 - 31883376
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    ||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  31883330 ttgttacaaaagttgtcaaaaagtggttgtacaaatatcatttctct 31883376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 1286960 - 1286923
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||| || ||||||||||||||||||||    
T  1286960 aaagttgtcaaaaaataattgttcaaatatcatttctc 1286923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 32644660 - 32644623
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 34442095 - 34442140
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatata 54  Q
    |||||||||||| ||| |||||| ||||||||||||||||| ||||    
T  34442095 caaaagttgtcataaaatagttgctcaaatatcatttctctttata 34442140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 35077161 - 35077124
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttct 47  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  35077161 aaaagttgtcaaaaaattgttgttcaaatatcatttct 35077124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 35213587 - 35213632
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||| |||||||||||| ||| ||| |||||||||||||||||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcatttctc 35213632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8505806 - 8505846
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  8505806 caaaagttgtcaaaaaatgattgttcaaatatcatttctct 8505846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 8645347 - 8645308
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  8645347 caaaagttgtcaaaaagt-gttgttcaaatatcatttctct 8645308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 9699362 - 9699405
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctctatat 53  Q
    ||||| |||||||||| || |||||||||||||||||||||||||    
T  9699362 caaaaattgtcaaaaaata-ttgttcaaatatcatttctctatat 9699405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 9954586 - 9954546
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  9954586 aaaagttgtcacaaattggttgtacaaatatcatttctcta 9954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 17902725 - 17902765
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  17902725 aaaagttgtcataaattagttatacaaatatcatttctcta 17902765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27334897 - 27334857
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| ||||||| ||||||||||||||||    
T  27334897 caaaagttgtcacaaaatagttgtacaaatatcatttctct 27334857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27395637 - 27395597
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||| ||| ||||||| ||||||||||||||||    
T  27395637 caaaagttgtcacaaaatagttgtacaaatatcatttctct 27395597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 19681 - 19632
Alignment:
Q  3 ttgttgcaaaagttgtcaaaaattagttgttcaaatatcatttctctata 52  Q
    ||||||||||||||||||  || | | |||||||||||||||||||||||    
T  19681 ttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctctata 19632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 24561 - 24598
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctc 48  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  24561 aaagttgacaaaaaatagttgttcaaatatcatttctc 24598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 1116 - 1076
Alignment:
Q  10 aaaagttgtcaaaaattagttgttcaaatatcatttctcta 50  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  1116 aaaagttgtcacaaaatagttgtacaaatatcatttctcta 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 10975 - 10935
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  10975 caaaagttgtcaaaaagtggttgttcaattatcatttctct 10935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 28359 - 28399
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||| ||||||| | ||||||||||||||||||||||    
T  28359 caaaagttatcaaaaagtggttgttcaaatatcatttctct 28399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 34445 - 34405
Alignment:
Q  11 aaagttgtcaaaaattagttgttcaaatatcatttctctat 51  Q
    |||||||||||||| ||||||| |||||||||||| |||||    
T  34445 aaagttgtcaaaaaatagttgtacaaatatcatttatctat 34405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 101938 - 101978
Alignment:
Q  9 caaaagttgtcaaaaattagttgttcaaatatcatttctct 49  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  101938 caaaagttgtcaaaaaatggttgttcagatatcatttctct 101978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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