View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_60 (Length: 212)
Name: NF15322_low_60
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_60 |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 3951662 - 3951460
Alignment:
| Q |
10 |
attatactataaatgggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaa |
109 |
Q |
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| T |
3951662 |
attatactataaatgggtgagtagcagaatgtatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaa |
3951563 |
T |
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| Q |
110 |
aattccatctggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaa |
209 |
Q |
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| T |
3951562 |
aattccatccggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaactctaagttgttaaa |
3951463 |
T |
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| Q |
210 |
act |
212 |
Q |
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||| |
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| T |
3951462 |
act |
3951460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 4027219 - 4027416
Alignment:
| Q |
15 |
actataaatgggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattc |
114 |
Q |
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|||||| |||| ||||||||||||| || ||||||||||||||| ||| ||| ||| ||||| |||||||| |||||||| |||| || | ||||| |
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| T |
4027219 |
actatagatggatgagtagcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagattttctagcaacaattc |
4027318 |
T |
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| Q |
115 |
catctggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaact |
212 |
Q |
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| T |
4027319 |
catatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaagttgttaaaact |
4027416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 4012917 - 4013117
Alignment:
| Q |
12 |
tatactataaatgggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaa |
111 |
Q |
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|||||||||||||| |||||||| | || ||| |||||||||||| | |||| ||||||||||| |||||||||| |||||| ||| || || | || |
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| T |
4012917 |
tatactataaatggatgagtagccgcacatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtcctagcaacaa |
4013016 |
T |
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| Q |
112 |
ttccatctggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaac |
211 |
Q |
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| T |
4013017 |
ttccatattgcaatgccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaagtcattaaaac |
4013116 |
T |
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| Q |
212 |
t |
212 |
Q |
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| T |
4013117 |
t |
4013117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 3990103 - 3990276
Alignment:
| Q |
29 |
agtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggcaatgcc |
128 |
Q |
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|||||||| || | ||||||||||||||||||| || |||||||||||||||||||||| | |||||| |||| || | ||||||| |||| |||||| |
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| T |
3990103 |
agtagcagcacatttctcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagattttctagcaacaattccagctggaaatgcc |
3990202 |
T |
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| Q |
129 |
ttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagt |
202 |
Q |
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| T |
3990203 |
ttacttccagaatccctgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaattctaagt |
3990276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 4004504 - 4004703
Alignment:
| Q |
13 |
atactataaatgggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaat |
112 |
Q |
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|||||||| |||| |||||| ||| || ||| ||||||||||||||| |||| || | | |||||||| ||||||| ||| ||||||| || | || |
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| T |
4004504 |
atactatatatggatgagtaccagcacatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccgaattatatgttctagcaatcat |
4004603 |
T |
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| Q |
113 |
tccatctggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaact |
212 |
Q |
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||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||| | ||||||||||||||| | ||||| ||||||||||||||| |
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| T |
4004604 |
tccatcttgcaatgccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcagggacaattttaagttgttaaaact |
4004703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 13400073 - 13400277
Alignment:
| Q |
11 |
ttatactataaatgggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttct---tgcg |
107 |
Q |
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||||||||||| || |||||||||| || ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
13400073 |
ttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagcagca |
13400172 |
T |
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| Q |
108 |
aaaattccatctggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgtta |
207 |
Q |
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| T |
13400173 |
acaattccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatataagttgtta |
13400272 |
T |
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| Q |
208 |
aaact |
212 |
Q |
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|||| |
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| T |
13400273 |
taact |
13400277 |
T |
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