View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_62 (Length: 205)

Name: NF15322_low_62
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_62
NF15322_low_62
[»] chr2 (3 HSPs)
chr2 (16-205)||(34775863-34776035)
chr2 (132-197)||(11967093-11967158)
chr2 (134-186)||(45636205-45636257)
[»] chr4 (3 HSPs)
chr4 (103-185)||(32973155-32973237)
chr4 (124-188)||(25669820-25669884)
chr4 (130-186)||(27117194-27117250)
[»] chr8 (1 HSPs)
chr8 (95-183)||(6908270-6908359)
[»] chr6 (2 HSPs)
chr6 (124-171)||(20864652-20864699)
chr6 (104-171)||(1580988-1581056)
[»] chr7 (3 HSPs)
chr7 (107-197)||(42440881-42440971)
chr7 (104-171)||(15735105-15735173)
chr7 (104-171)||(15735319-15735387)
[»] chr5 (1 HSPs)
chr5 (103-185)||(2721829-2721910)
[»] chr1 (1 HSPs)
chr1 (105-186)||(32752319-32752399)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 34776035 - 34775863
Alignment:
Q  16 acatttccagttccagagaattagaatttacttatactgctgtattaggttatattggccctaactcatccttataaatggtgagtctatataaatggtg 115  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                     
T  34776035 acatttccagttccagcgaattagaatttacttataccgctgtattaggttatattggccctaactcatccttataaatggtg----------------- 34775953  T
Q  116 ggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaaccagtttgcaagggtgcctct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34775952 ggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaaccagtttgcaagggtgcctct 34775863  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 11967093 - 11967158
Alignment:
Q  132 ggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaaccagtttgcaagg 197  Q
    |||||| || |||||||||||||| |||||||||||||||  | ||||||||||||| ||| ||||    
T  11967093 ggctctaatcccatagtaggtttttatattgggtctaactcattcttacaaaaccagcttgtaagg 11967158  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 45636205 - 45636257
Alignment:
Q  134 ctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaacc 186  Q
    ||||||||||||| |||||||| |||||||| ||||||  |||||| ||||||    
T  45636205 ctctgataccatattaggtttttatattgggcctaactcatccttagaaaacc 45636257  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 32973237 - 32973155
Alignment:
Q  103 tatataaatggtgggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaac 185  Q
    |||||||||||||||  ||| |||  |||| || |||||||||| |||||||| ||||| |||||||||  ||||||||||||    
T  32973237 tatataaatggtgggtggccaaattgatagactatgataccatattaggtttttatatttggtctaactcatccttacaaaac 32973155  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 25669884 - 25669820
Alignment:
Q  124 aatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaaccag 188  Q
    ||||||||||||||||||||||| || ||||| |||| ||| ||||||  | |||||||||||||    
T  25669884 aatcaataggctctgataccatattaagtttttatatagggcctaactcattcttacaaaaccag 25669820  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 27117194 - 27117250
Alignment:
Q  130 taggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaacc 186  Q
    |||||||  |||||||| |||||||| ||| |||||||||||  |||||||||||||    
T  27117194 taggctccaataccatattaggtttttataatgggtctaactcatccttacaaaacc 27117250  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 6908359 - 6908270
Alignment:
Q  95 ggtgagtctatataaatggtgggcagcccaa-tcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaa 183  Q
    |||||||  |||||||| ||||| ||||||| ||||||| ||||||||||||| ||| |||| || ||||| | |||| |||||||||||    
T  6908359 ggtgagtggatataaatagtgggtagcccaaatcaatagactctgataccatattagatttttatgttgggccaaactcgtccttacaaa 6908270  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 20864652 - 20864699
Alignment:
Q  124 aatcaataggctctgataccatagtaggttttgatattgggtctaact 171  Q
    |||||||||| |||||||||||| || ||||| |||||||||||||||    
T  20864652 aatcaataggttctgataccatattaagtttttatattgggtctaact 20864699  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 1581056 - 1580988
Alignment:
Q  104 atataaatggtgggcagccc-aatcaataggctctgataccatagtaggttttgatattgggtctaact 171  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |  ||| |||| |||||||| ||||||    
T  1581056 atataaatggtgggtagcccgaatcattaggctctgataccttgttagctttttatattgggcctaact 1580988  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 42440971 - 42440881
Alignment:
Q  107 taaatggtgggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaaccagtttgcaagg 197  Q
    |||||||||||  |||  |||||| |||||| |||||||| |||| ||| ||| || | ||||||  ||||||||||||| ||||||||||    
T  42440971 taaatggtgggtggcctgatcaatgggctctaataccatattagggttttatactgagcctaactcatccttacaaaaccggtttgcaagg 42440881  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 15735105 - 15735173
Alignment:
Q  104 atataaatggtgggcagccc-aatcaataggctctgataccatagtaggttttgatattgggtctaact 171  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |  ||| |||| |||||||| ||||||    
T  15735105 atataaatggtgggtagcccgaatcattaggctctgataccttgttagctttttatattgggcctaact 15735173  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 15735319 - 15735387
Alignment:
Q  104 atataaatggtgggcagccc-aatcaataggctctgataccatagtaggttttgatattgggtctaact 171  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |  ||| |||| |||||||| ||||||    
T  15735319 atataaatggtgggtagcccgaatcattaggctctgataccttgttagctttttatattgggcctaact 15735387  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 2721910 - 2721829
Alignment:
Q  103 tatataaatggtgggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaac 185  Q
    |||||||||| ||||  |||| ||||| ||| |||||||||| | |||||||||||||| || ||||||  ||||||||||||    
T  2721910 tatataaatgatgggtggcccgatcaaaaggttctgatacca-attaggttttgatattaggcctaactcatccttacaaaac 2721829  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 32752319 - 32752399
Alignment:
Q  105 tataaatggtgggcagcccaatcaataggctctgataccatagtaggttttgatattgggtctaacttgtccttacaaaacc 186  Q
    ||||||| |||| | |||||||| |||||| ||||||||||| || ||||  ||| |||||||||||  |||||||||||||    
T  32752319 tataaattgtggacggcccaatcgataggc-ctgataccatattatgtttgtataatgggtctaactcatccttacaaaacc 32752399  T

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