View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_7 (Length: 560)
Name: NF15322_low_7
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 10661977 - 10662511
Alignment:
| Q |
18 |
cctctaagtgattattacccactgaaagcacaattagggatgaaagatttcctatgaagggtggaattcttcaggttagattgttgtttgaaatccccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10661977 |
cctctaagtgattattacccactgaaagcacaattagggatgaaagatttcctatgaagggtggaattcttccggttagattgttgtttgaaatccccaa |
10662076 |
T |
|
| Q |
118 |
catttgtagtttatgaagagagctgatgccaattggtattttaccaaccaaatgatttctctgtaagtataagacttcaagatcagagcaacttgacaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662077 |
catttgtagtttatgaagagagctgatgccaattggtattttaccaaccaaatgatttctctgtaagtataagacttcaagatcagagcaacttgacaag |
10662176 |
T |
|
| Q |
218 |
tttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtgggattttaccaaagaaactat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662177 |
tttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtgggattttaccaaagaaactat |
10662276 |
T |
|
| Q |
318 |
tgtttgcaaggttgagacttatcaaaaatgagagattgccaacatggggagatatgaatccatgcaagttatatccatctaagtctaactctataactct |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10662277 |
tgtttgcaaggttgagacttatcaaaaaagagagattgccaacatggggagatatgaatccatgcaagttatatccatctaagtctaactctataactct |
10662376 |
T |
|
| Q |
418 |
ttgtttcatgagactacacgcaatcccgtgccagctgcagtagtgagttgaagtattccaagagctcgaaatctcatatgagtcattagatattgattct |
517 |
Q |
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| T |
10662377 |
ttgttgcatgagactacacgcaatcccgtgccagttgcagtagtgagttgaagtattccaagagctcaagatctcatacgggtcattagatattgattct |
10662476 |
T |
|
| Q |
518 |
ttgaatttgagcaacgctaaggaatccgtctcgtt |
552 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |
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| T |
10662477 |
ttgaatttgagcaacgctaagtaatccgtctcgtt |
10662511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 51 - 548
Target Start/End: Original strand, 10654127 - 10654624
Alignment:
| Q |
51 |
ttagggatgaaagatttcctatgaagggtggaattcttcaggttagattgttgtttgaaatccccaacatttgtagtttatgaagagagctgatgccaat |
150 |
Q |
| |
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|||| ||||||| |||||||||| | ||| ||||||||| ||||| |||||| |||| || | |||||| || || |||||||||||||| || | ||| |
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| T |
10654127 |
ttagagatgaaatatttcctatggatggttgaattcttccggttaaattgttatttgtaagctccaacaactgaagcttatgaagagagctaattcgaat |
10654226 |
T |
|
| Q |
151 |
tggtattttaccaaccaaatgatttctctgtaagtataagacttcaagatcagagcaacttgacaagtttgtaggaatctcccctgtcatggagttgtta |
250 |
Q |
| |
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|||||||||||||| || |||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |
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| T |
10654227 |
tggtattttaccaatcagatgatttccagataagaataagtattcaagatcagagcaacttgtcaagtttgtaggaatctcccctgtcattgagttattg |
10654326 |
T |
|
| Q |
251 |
ttaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtgggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgaga |
350 |
Q |
| |
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| | ||||| ||||||||| |||| ||||||||||||| ||||| || |||||||||||||| ||||||||| |||| || ||||||| |||| |
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| T |
10654327 |
gagagaacgagttgctgcaatcgtgacaactgaccgagttcatgagggatatttccaaagaaactattttttgcaaggatgaggtttgtcaaaaaagaga |
10654426 |
T |
|
| Q |
351 |
gattgccaacatggggagatatgaatccatgcaagttatatccatctaagtctaactctataactctttgtttcatgagactacacgcaatcccgtgcca |
450 |
Q |
| |
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||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||| |||| |||||||||| | |||| || |||| | ||| || ||||| |
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| T |
10654427 |
gattgcctacatggggagatatgactccatgcaaattaaatccatctaagtctagctctgtaactctttgatgcatgggattacatgtaattccatgcca |
10654526 |
T |
|
| Q |
451 |
gctgcagtagtgagttgaagtattccaagagctcgaaatctcatatgagtcattagatattgattctttgaatttgagcaacgctaaggaatccgtct |
548 |
Q |
| |
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| ||||||||| ||||||||||||||||| | | || |||||| ||||||||| |||||||||||||||||||| ||||||||| |||| |||| |
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| T |
10654527 |
attacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaacgctaagtaatctgtct |
10654624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 7191319 - 7190803
Alignment:
| Q |
18 |
cctctaagtgattattacccactgaaagcacaattagggatgaaagatttcctatgaagggtggaattcttcaggttagattgttgtttgaaatccccaa |
117 |
Q |
| |
|
|||||||| | |||| |||||||||||| | | ||| |||||||||| |||||||| | ||| ||||||| ||||| |||||| ||||||||| |||| |
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|
| T |
7191319 |
cctctaagaggttatcacccactgaaagaatagctagccatgaaagattccctatgaacgttggtattcttccggttaaattgttttttgaaatctccaa |
7191220 |
T |
|
| Q |
118 |
catttgtagtttatgaagagagctgatgccaattggtattttaccaaccaaatgatttctctgt-aagtataagacttcaagatcagagcaacttgacaa |
216 |
Q |
| |
|
|| ||| || || ||||||||||| || ||||||||||||||||||| | |||||||| | || |||||||||| |||||||| ||||||||| | ||| |
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|
| T |
7191219 |
cacttgaagcttttgaagagagcttattccaattggtattttaccaataagatgatttc-cagtcaagtataagaattcaagattagagcaactcgtcaa |
7191121 |
T |
|
| Q |
217 |
gtttgtaggaatctcccctgtcatggagttgttattaatcaagagttcctgcaatcggaacaatcgaccgagttcatgtgggattttaccaaagaaacta |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | | | | ||||||||||||||| ||||| ||||||||| ||||||||||| || ||||||||| |
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| T |
7191120 |
gtttgtaggaatctcccctgtcaaggagttatcaatgagtacgagttcctgcaatcgaaacaactgaccgagtttctgtgggatttttccgaagaaacta |
7191021 |
T |
|
| Q |
317 |
ttgtttgcaaggttgagacttatcaaaaatgagagattgccaacatggggagatatgaatccatgcaagttatatccatctaagtctaactctataactc |
416 |
Q |
| |
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|||| |||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||| | |||||| || |||| |||||| ||||| |
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| T |
7191020 |
ttgtgtgcaaggttgaggtttctcaaaaaagagagattgccaacatggggagatatcaatccatgcagctgatatccttccaagtttaactcggcaactc |
7190921 |
T |
|
| Q |
417 |
tttgtttcatgagactacacgcaatcccgtgccagctgcagtagtgagttgaagtattccaagagctcgaaatctcatatgagtcattagatattgattc |
516 |
Q |
| |
|
|||| | |||| |||| || | || || | ||| ||||| ||||||||||| ||||||||||| | | || |||||| ||||||||||||||||| |
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|
| T |
7190920 |
tttgatgcatgggactgcatgtgattccataccacttgcagaagtgagttgaactattccaagaggccaagattccatatggatcattagatattgattc |
7190821 |
T |
|
| Q |
517 |
tttgaatttgagcaacgc |
534 |
Q |
| |
|
|||||| ||||||||||| |
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| T |
7190820 |
tttgaacttgagcaacgc |
7190803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 10563068 - 10562991
Alignment:
| Q |
294 |
gtgggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgagagattgccaacatggggagata |
371 |
Q |
| |
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||||||||| ||| | |||||||||||| |||||| |||| |||||||||| | |||||||||||||| |||||||| |
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| T |
10563068 |
gtgggatttctccagaaaaactattgtttccaaggtcgagatttatcaaaaaggtgagattgccaacatagggagata |
10562991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 10719062 - 10719143
Alignment:
| Q |
290 |
tcatgtgggattttaccaaagaaactattgtttgcaaggttgagacttatcaaaaatgagagattgccaacatggggagata |
371 |
Q |
| |
|
|||||||| |||| |||||||| || |||||| ||| ||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
10719062 |
tcatgtggaatttctccaaagaagctgttgtttataagattgaggtttatcaaaaaggagagattgccaacatggggagata |
10719143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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