View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_8 (Length: 548)
Name: NF15322_low_8
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 65 - 530
Target Start/End: Complemental strand, 26175070 - 26174617
Alignment:
| Q |
65 |
gatggatccccaccttttataaatttttatacaagttgaaaatgagctacaccacgctcttggaatgattacatggtatatgtaatagtatgatatacaa |
164 |
Q |
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| T |
26175070 |
gatggatccccaccttttataaatttttatacaagttgaaaatgggttgcaccacgctcttggaatgattacatggtatatgtaatac--------acaa |
26174979 |
T |
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| Q |
165 |
aggctttctttattgcaggaacaattaggcacatattctgtaattaatgcttcaaaactataatctatcaaataagggtcctactaattgccaacttttg |
264 |
Q |
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| T |
26174978 |
aggcttt----attgcaggaacaattaggcacatattctgtaattaatgcttcaaaactataatctatcaaataagggtcctactaattgccaacttttg |
26174883 |
T |
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| Q |
265 |
taacaagtacatggtttgctacattataataatattttagaagtcatacgttaaattaatcaacggtaattgaatcataagctagtccacgctatgtatg |
364 |
Q |
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| T |
26174882 |
taacaagtacatggtttgctacattataataatattttagaagtcatacgttaaattaatcaacagtaattgaatcataagctagtccacgctatgtatg |
26174783 |
T |
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| Q |
365 |
aaacggtgctgacattgattatgattaaaatgattaattagaatctgtgttttgatttaacagggaattacaccctgcgtgcaccagcaccactactagc |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26174782 |
aaacggtgctgacattgattatgattaaaatgattaattagaatctgtgttttgatttaacagggaattacaccctgcgtgcaccagcaccactactagc |
26174683 |
T |
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| Q |
465 |
actaaggtgtattcatgttggttcattggcaaaccattcattttgtttcattttatataagcatgg |
530 |
Q |
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| T |
26174682 |
actaaggtgtattcatgttggttcattggcaaaccattcattttgtttcattttatataagcatgg |
26174617 |
T |
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