View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15323_high_3 (Length: 248)

Name: NF15323_high_3
Description: NF15323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15323_high_3
NF15323_high_3
[»] chr1 (31 HSPs)
chr1 (6-207)||(25585292-25585489)
chr1 (91-209)||(15417801-15417919)
chr1 (92-209)||(24134608-24134725)
chr1 (91-199)||(50011500-50011608)
chr1 (94-205)||(47651868-47651978)
chr1 (88-206)||(50065000-50065118)
chr1 (89-208)||(8893851-8893970)
chr1 (91-209)||(49619965-49620083)
chr1 (89-206)||(2017672-2017788)
chr1 (86-206)||(25421842-25421963)
chr1 (94-209)||(48497197-48497312)
chr1 (91-207)||(34702299-34702415)
chr1 (89-209)||(43109222-43109342)
chr1 (107-209)||(25031481-25031583)
chr1 (125-207)||(42937215-42937297)
chr1 (129-198)||(12148568-12148637)
chr1 (108-209)||(30735838-30735939)
chr1 (91-203)||(25800323-25800435)
chr1 (96-207)||(50302837-50302948)
chr1 (120-206)||(14262708-14262794)
chr1 (91-169)||(22386260-22386338)
chr1 (91-209)||(40061436-40061554)
chr1 (94-207)||(7438617-7438730)
chr1 (108-201)||(52164363-52164456)
chr1 (91-138)||(35527390-35527437)
chr1 (89-207)||(12973264-12973382)
chr1 (91-145)||(27054683-27054737)
chr1 (89-143)||(39304253-39304307)
chr1 (129-209)||(10123037-10123117)
chr1 (163-207)||(20267877-20267921)
chr1 (115-207)||(52720701-52720793)
[»] chr8 (27 HSPs)
chr8 (96-209)||(1360119-1360231)
chr8 (92-205)||(1032564-1032677)
chr8 (88-176)||(30466669-30466757)
chr8 (89-205)||(38063968-38064084)
chr8 (89-204)||(41454816-41454931)
chr8 (90-199)||(12831562-12831671)
chr8 (89-206)||(38289222-38289339)
chr8 (120-209)||(43413870-43413959)
chr8 (90-209)||(4259851-4259970)
chr8 (88-199)||(23139064-23139177)
chr8 (90-196)||(44828429-44828536)
chr8 (95-206)||(22652680-22652791)
chr8 (128-207)||(34037934-34038013)
chr8 (91-145)||(13906674-13906728)
chr8 (102-204)||(33820384-33820486)
chr8 (144-185)||(5598086-5598127)
chr8 (144-185)||(5637148-5637189)
chr8 (91-207)||(8350429-8350546)
chr8 (89-206)||(41845416-41845533)
chr8 (94-207)||(45536714-45536827)
chr8 (108-176)||(36103939-36104007)
chr8 (103-207)||(39104612-39104715)
chr8 (91-206)||(19733056-19733171)
chr8 (91-153)||(10161957-10162019)
chr8 (103-199)||(5904368-5904464)
chr8 (162-206)||(6938625-6938669)
chr8 (89-145)||(29114093-29114149)
[»] chr6 (18 HSPs)
chr6 (91-207)||(29321962-29322078)
chr6 (90-209)||(6228244-6228363)
chr6 (91-209)||(18903351-18903469)
chr6 (88-207)||(4854292-4854411)
chr6 (102-209)||(19748103-19748209)
chr6 (103-206)||(25091086-25091189)
chr6 (92-209)||(20415546-20415663)
chr6 (120-205)||(31637366-31637451)
chr6 (93-209)||(17216953-17217069)
chr6 (91-145)||(15717061-15717115)
chr6 (97-207)||(24794881-24794991)
chr6 (88-207)||(11552861-11552980)
chr6 (89-176)||(18618556-18618643)
chr6 (92-207)||(28536154-28536269)
chr6 (108-186)||(21874228-21874306)
chr6 (95-156)||(25045737-25045798)
chr6 (103-199)||(32470689-32470786)
chr6 (125-209)||(3974468-3974552)
[»] chr3 (24 HSPs)
chr3 (89-209)||(33528189-33528309)
chr3 (91-199)||(2259150-2259257)
chr3 (93-209)||(47864631-47864747)
chr3 (90-209)||(16141337-16141456)
chr3 (108-207)||(38668138-38668237)
chr3 (90-209)||(50381706-50381825)
chr3 (94-207)||(39739270-39739383)
chr3 (91-198)||(46247253-46247363)
chr3 (89-207)||(985905-986023)
chr3 (90-199)||(11483605-11483714)
chr3 (92-209)||(25165434-25165555)
chr3 (92-199)||(29226320-29226427)
chr3 (120-207)||(31435487-31435574)
chr3 (108-203)||(33830358-33830453)
chr3 (103-209)||(9320943-9321049)
chr3 (91-209)||(27817052-27817169)
chr3 (125-207)||(44062028-44062109)
chr3 (91-145)||(55426107-55426161)
chr3 (131-207)||(29645813-29645889)
chr3 (90-146)||(34225187-34225243)
chr3 (150-201)||(40415554-40415605)
chr3 (103-209)||(22602187-22602293)
chr3 (91-145)||(30162650-30162704)
chr3 (91-144)||(1084077-1084130)
[»] chr7 (26 HSPs)
chr7 (91-209)||(48433694-48433812)
chr7 (95-199)||(12166079-12166183)
chr7 (90-199)||(40273813-40273922)
chr7 (90-206)||(38378211-38378327)
chr7 (89-208)||(23824577-23824695)
chr7 (92-207)||(43440683-43440798)
chr7 (108-209)||(3961392-3961493)
chr7 (91-196)||(33248799-33248904)
chr7 (94-209)||(27454007-27454123)
chr7 (108-206)||(48619807-48619904)
chr7 (91-208)||(31793461-31793578)
chr7 (90-199)||(34322018-34322127)
chr7 (91-199)||(24029978-24030086)
chr7 (91-207)||(26455991-26456107)
chr7 (97-197)||(41468835-41468934)
chr7 (95-207)||(42554631-42554743)
chr7 (111-209)||(4956076-4956174)
chr7 (96-208)||(3889785-3889898)
chr7 (90-207)||(46266660-46266777)
chr7 (162-209)||(28914861-28914908)
chr7 (92-174)||(42338266-42338348)
chr7 (102-207)||(24315340-24315444)
chr7 (162-207)||(37563237-37563282)
chr7 (90-170)||(1575686-1575766)
chr7 (91-207)||(36528205-36528321)
chr7 (131-199)||(42841775-42841843)
[»] chr4 (18 HSPs)
chr4 (94-209)||(22341846-22341961)
chr4 (91-209)||(50815700-50815818)
chr4 (89-209)||(51974738-51974858)
chr4 (92-209)||(40406944-40407062)
chr4 (89-208)||(2832056-2832175)
chr4 (102-209)||(11491203-11491310)
chr4 (94-209)||(16556447-16556562)
chr4 (95-206)||(35909015-35909127)
chr4 (91-199)||(46283115-46283223)
chr4 (91-184)||(23448966-23449059)
chr4 (94-209)||(36993037-36993152)
chr4 (90-176)||(27862848-27862934)
chr4 (125-198)||(53096518-53096592)
chr4 (90-141)||(8716442-8716493)
chr4 (120-207)||(25234844-25234931)
chr4 (153-207)||(49607931-49607985)
chr4 (120-209)||(45355702-45355790)
chr4 (120-209)||(45369443-45369531)
[»] chr5 (15 HSPs)
chr5 (92-209)||(31250141-31250258)
chr5 (89-199)||(38503251-38503361)
chr5 (92-206)||(43227860-43227974)
chr5 (90-199)||(930932-931041)
chr5 (91-209)||(4395835-4395953)
chr5 (94-206)||(3867741-3867852)
chr5 (90-206)||(15470608-15470724)
chr5 (103-207)||(1572115-1572219)
chr5 (97-209)||(17077360-17077472)
chr5 (91-145)||(12375460-12375514)
chr5 (120-209)||(33545371-33545459)
chr5 (91-207)||(5039674-5039789)
chr5 (120-207)||(26671605-26671692)
chr5 (120-207)||(26943202-26943289)
chr5 (85-195)||(87778-87888)
[»] scaffold0001 (1 HSPs)
scaffold0001 (91-209)||(419705-419823)
[»] chr2 (16 HSPs)
chr2 (92-203)||(33482632-33482743)
chr2 (91-209)||(34107488-34107605)
chr2 (90-206)||(3330188-3330304)
chr2 (110-209)||(17543074-17543173)
chr2 (91-206)||(25553133-25553247)
chr2 (92-205)||(31149090-31149202)
chr2 (97-209)||(33065241-33065353)
chr2 (88-209)||(41749937-41750057)
chr2 (108-196)||(6866518-6866606)
chr2 (163-209)||(17376438-17376484)
chr2 (120-209)||(5901815-5901904)
chr2 (93-209)||(18424136-18424249)
chr2 (120-207)||(42678310-42678397)
chr2 (92-207)||(43027149-43027264)
chr2 (95-145)||(16403522-16403572)
chr2 (149-194)||(10185414-10185459)
[»] scaffold0072 (1 HSPs)
scaffold0072 (125-199)||(17727-17801)
[»] scaffold0018 (1 HSPs)
scaffold0018 (91-143)||(121849-121901)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 25585489 - 25585292
Alignment:
Q  6 cagagactcagaaccataacaattccattaactaaaatagttgtttagttaaatctagttacattgttaaaagaaaccaaacattgtccccatgaactta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||| ||||    
T  25585489 cagagactcagaaccataacaattccattaactaaaatagttgtttagttaaatctag----attgttaaaagaaaccaaacattatccccatgagctta 25585394  T
Q  106 gttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccact 205  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  25585393 gttcatttggtaaaggatgatgcacaatatgtgcaggggctagagttcaaatctcagataccctacttatttatcttacaggtgaatttctctaaccact 25585294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 15417919 - 15417801
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||| |||| || ||| ||||||| ||||||| || || ||| |||    
T  15417919 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaagatga 15417820  T
Q  191 atttctctaaccactaggc 209  Q
    |||||||||  ||||||||    
T  15417819 atttctctagtcactaggc 15417801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 24134725 - 24134608
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||||    
T  24134725 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 24134626  T
Q  192 tttctctaaccactaggc 209  Q
    |||||||| |||||||||    
T  24134625 tttctctagccactaggc 24134608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 50011500 - 50011608
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| |||||||||||||||||||||||| |||| || | |||||| || ||||||| || || |||||||    
T  50011500 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttattcatctttaaggtga 50011599  T
Q  191 atttctcta 199  Q
    |||||||||    
T  50011600 atttctcta 50011608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 47651868 - 47651978
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||| ||||| |||||||| || |||| |||||||||||||||||||||||| |||| ||||  ||||| || ||||||| ||||| ||||||||||    
T  47651868 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaatcctagacatcccacttattcatttt-aaggtgaatt 47651966  T
Q  194 tctctaaccact 205  Q
    |||||| |||||    
T  47651967 tctctagccact 47651978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 50065000 - 50065118
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 187  Q
    ||||||||||| | ||||| |||||||  || |||| ||||||||||||||||||| | || |||| |||||| ||||||| ||||||| || || ||||    
T  50065000 attgtccccataagcttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatctttaagg 50065099  T
Q  188 tgaatttctctaaccacta 206  Q
    |||||||||||| ||||||    
T  50065100 tgaatttctctagccacta 50065118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 8893851 - 8893970
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||| ||||| |||||||||||||| || |||| ||||||||||||| ||||||  || |||| || | || |||||| ||||||| || || |||||    
T  8893851 ttgtccacatgagcttagttcatttggtaagggataatgcacaatatgtacaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggt 8893950  T
Q  189 gaatttctctaaccactagg 208  Q
    ||||||||| ||||||||||    
T  8893951 gaatttctccaaccactagg 8893970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 49619965 - 49620083
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| ||||||||||||||||||||  || ||||| | | | ||||||| ||||||| || || || ||||    
T  49619965 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttattcatctttaaagtga 49620064  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  49620065 atttctctagccactaggc 49620083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 2017788 - 2017672
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||||||||||||  |||||| |||| |||| | ||||||| |||| || ||||| |||||    
T  2017788 ttgtcctcatgagcttagctcatttggtaagggataatgcacaatatgtgcataggctggggttcgaatcccggacaccccacttgttcatttt-aaggt 2017690  T
Q  189 gaatttctctaaccacta 206  Q
    ||||||||||| ||||||    
T  2017689 gaatttctctagccacta 2017672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 25421842 - 25421963
Alignment:
Q  86 acattgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttattta-ttttaa 184  Q
    ||||||||||||||| ||||  |||||||| || |||  ||||||||| |||| ||||||||| ||||||| | ||||||| | ||||||| |  || ||    
T  25421842 acattgtccccatgagcttaactcatttggtaagggacaatgcacaatttgtgtaggggctggggttcaaaccccagacactccacttattcaccttaaa 25421941  T
Q  185 aggtgaatttctctaaccacta 206  Q
    ||||||||||||||||||||||    
T  25421942 aggtgaatttctctaaccacta 25421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 48497312 - 48497197
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    |||||||  |||| |||||||| || |||| ||||||||||||||||||||| ||||||| |||| | ||||| | | ||||| || || ||||| ||||    
T  48497312 cccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatctttaaggtaaatt 48497213  T
Q  194 tctctaaccactaggc 209  Q
    |||||| |||||||||    
T  48497212 tctctagccactaggc 48497197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 34702415 - 34702299
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||  ||||||| || || ||| |||    
T  34702415 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttattcatctttaagatga 34702316  T
Q  191 atttctctaaccactag 207  Q
    |||||| || |||||||    
T  34702315 atttctttagccactag 34702299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 43109342 - 43109222
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    ||||| |||||| ||||| |||||||| || |||| ||||| ||||||||||||||| || |||| || | | ||||||  | ||||| || || |||||    
T  43109342 ttgtctccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttattcatctttaaggt 43109243  T
Q  189 gaatttctctaaccactaggc 209  Q
    ||||||||||| |||||||||    
T  43109242 gaatttctctagccactaggc 43109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 25031583 - 25031481
Alignment:
Q  107 ttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 206  Q
    ||||||||| ||  ||| ||||| ||||||||||||||| || |||| |||  | ||||||| ||||||| || || |||||||||||||||| ||||||    
T  25031583 ttcatttggtaagagataatgcataatatgtgcaggggccggggttcgaattccggacaccccacttattcatctttaaggtgaatttctctagccacta 25031484  T
Q  207 ggc 209  Q
    |||    
T  25031483 ggc 25031481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 42937297 - 42937215
Alignment:
Q  125 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||||||||||||||||| |||||||| ||  ||||||||| || ||||| || || |||||||||||||||  |||||||    
T  42937297 atgcacaatatgtgcaggggttggagttcgaacttcagacaccttatttattcatctttaaggtgaatttctctcgccactag 42937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 12148637 - 12148568
Alignment:
Q  129 acaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctct 198  Q
    ||||||||||||||||  |||||||||| | ||||||||| ||||||| || || |||||||||||||||    
T  12148637 acaatatgtgcaggggtcggagttcaaaccccagacaccccacttattcatctttaaggtgaatttctct 12148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 30735838 - 30735939
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||||| || |||| ||||||||| ||||||||||| ||||||  || |   ||||||  ||||||| || | |||||||||||||||||||||||||    
T  30735838 tcatttggtaagggataatgcacaatttgtgcaggggccggagtttgaaccctggacaccacacttattcatctcaaaggtgaatttctctaaccactag 30735937  T
Q  208 gc 209  Q
    ||    
T  30735938 gc 30735939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 25800435 - 25800323
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    ||||| |||||||||||||||| || || |||| ||||||||| | || |||| | || |||| || | | ||||||| ||||||| || ||||||||||    
T  25800435 gtcccaatgaacttagttcattcggtaagggataatgcacaatttatgtagggtccggggttccaaccccggacaccccacttattcatcttaaaggtga 25800336  T
Q  191 atttctctaacca 203  Q
    |||||| ||||||    
T  25800335 atttctttaacca 25800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 50302948 - 50302837
Alignment:
Q  96 catgaacttagttcatttggcaaaggatgatgcacaatatgtgcag-gggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    |||||| |||| |||||||| || |||| ||||| ||||||||||| ||||||| |||| || | | ||||| ||||||||| || || |||||||||||    
T  50302948 catgaatttagctcatttggtaagggataatgcataatatgtgcagagggctggggttcgaacc-ctgacactctacttattcatctttaaggtgaattt 50302850  T
Q  195 ctctaaccactag 207  Q
    ||||| |||||||    
T  50302849 ctctagccactag 50302837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 14262794 - 14262708
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 206  Q
    |||| ||||||||||| ||||||||  || |||| || | | ||||||||||||||| || || |||||||||||||||| ||||||    
T  14262794 ggataatgcacaatatatgcaggggtcggggttcgaaccccggacaccctacttattcatctttaaggtgaatttctctagccacta 14262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 22386338 - 22386260
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccct 169  Q
    ||||||| || ||||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | ||||||||||    
T  22386338 gtccccacgagcttagctcatttggtaagggattatgcacaatatgtgcaggggttggggttcgaaccccagacaccct 22386260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 40061436 - 40061554
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||  |||||||| || ||||  ||||||||||||  ||||||||| |||| ||   | ||||||| ||||||| || || ||||||     
T  40061436 gtccccatgagcttaactcatttggtaagggatagtgcacaatatgtataggggctggggttcgaactccggacaccccacttattcatctttaaggtgg 40061535  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  40061536 atttctctagccactaggc 40061554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 7438617 - 7438730
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||| ||||| |||||||| || |||| ||||||||| |||| |||||  || |||| ||   | ||||||| ||||||| || |||||||||||||    
T  7438617 cccatgagcttagctcatttggtaagggataatgcacaatttgtgtaggggtcggggttcgaactccggacaccccacttattcatcttaaaggtgaatt 7438716  T
Q  194 tctctaaccactag 207  Q
    ||| || |||||||    
T  7438717 tctttagccactag 7438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 52164456 - 52164363
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    |||||||| ||  ||| |||||||||||||||||||   || |||| |||  | ||||||| ||||||| ||||| ||||||||||||||||||    
T  52164456 tcatttggtaagagataatgcacaatatgtgcagggatcggggttcgaattccggacaccccacttattaatttttaaggtgaatttctctaac 52164363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 35527437 - 35527390
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtg 138  Q
    |||||||||||||||| |||||||| || |||| ||||||||||||||    
T  35527437 gtccccatgaacttagctcatttggtaagggataatgcacaatatgtg 35527390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 12973382 - 12973264
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||||| ||||||||| |   ||||||   | ||||||| ||||||| || || |||||    
T  12973382 ttgtccccatgagtttagctcatttggtaagggataatgcacaatatatgcaggggccgagattcaaactcctgacaccccacttattcatctttaaggt 12973283  T
Q  189 gaatttctctaaccactag 207  Q
     ||||||| || |||||||    
T  12973282 aaatttctttagccactag 12973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 27054683 - 27054737
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| || |||| ||||||||||| |||||||||    
T  27054683 gtccccatgagcttagctcatttggtaagggataatgcacaatatctgcaggggc 27054737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 39304307 - 39304253
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggg 143  Q
    |||||||||||| ||||| |||||||| || |||| ||||| |||||||||||||    
T  39304307 ttgtccccatgagcttagctcatttggtaagggataatgcataatatgtgcaggg 39304253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 10123117 - 10123037
Alignment:
Q  129 acaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||||||||| |||||  || |||| || | || |||||| ||||||| || || |||||||||||||||| |||||||||    
T  10123117 acaatatgtgtaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggtgaatttctctagccactaggc 10123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 20267921 - 20267877
Alignment:
Q  163 acaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||| |||||||||  || ||||||||||||||||||||||||    
T  20267921 acaccccacttatttacctttaaggtgaatttctctaaccactag 20267877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 52720701 - 52720793
Alignment:
Q  115 gcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||| |||| ||||| ||| |||| |||| |||| |||| || | ||||||||  ||||||| || || || |||||||||||||||||||||    
T  52720701 gcaagggataatgcataatgtgtgtagggactggggttcgaaccccagacaccacacttattcatctttaaagtgaatttctctaaccactag 52720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 1360231 - 1360119
Alignment:
Q  96 catgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttc 195  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||| |||| || | | ||||||| ||||||| |||||||| |||||||||    
T  1360231 catgagcttagctcatttggcaaaggataatgcacaatatgtgtaggggctggggttcgaaccccggacaccccacttattcattttaaa-gtgaatttc 1360133  T
Q  196 tctaaccactaggc 209  Q
    ||||||||||||||    
T  1360132 tctaaccactaggc 1360119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 1032564 - 1032677
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| |||||||| || |||| |||||||||||||||||||||||| |||| || | ||||||||| ||||||| || || ||||||||    
T  1032564 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggtgaa 1032663  T
Q  192 tttctctaaccact 205  Q
    |||||||| |||||    
T  1032664 tttctctagccact 1032677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 30466669 - 30466757
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 176  Q
    ||||||||||||| ||||| |||||||| || || | |||||||||||||||||||||||| |||| || ||||||||||| |||||||    
T  30466669 attgtccccatgagcttagctcatttggtaagggctaatgcacaatatgtgcaggggctggggttcgaacctcagacaccccacttatt 30466757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 38063968 - 38064084
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| |||| ||||||||| || |||| ||||||||| ||||||||| |||| | |  || | ||||||||| ||||||| || || |||||    
T  38063968 ttgtccccatgagcttaattcatttggtaagggataatgcacaatttgtgcagggactgggggttgaaccccagacaccccacttattcatctttaaggt 38064067  T
Q  189 gaatttctctaaccact 205  Q
    |||||||||||||||||    
T  38064068 gaatttctctaaccact 38064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 41454931 - 41454816
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || || ||    
T  41454931 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaatgt 41454832  T
Q  189 gaatttctctaaccac 204  Q
    ||||||||||| ||||    
T  41454831 gaatttctctagccac 41454816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 12831562 - 12831671
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    |||||||||||  |||  |||||||| ||||||  ||||||||||||||||||| ||||||||| |||| |||||| || ||||| |||  ||||| |||    
T  12831562 tgtccccatgagtttaactcatttggtaaaggacaatgcacaatatgtgcagggtctggagttcgaatcccagacatcccacttaattaccttaaaagtg 12831661  T
Q  190 aatttctcta 199  Q
    ||||||||||    
T  12831662 aatttctcta 12831671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 38289339 - 38289222
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||| ||||| | ||||| |||||||| || |||| ||||||||||||||||||||  || |||| || |||| |||||| ||||||| || || |||||    
T  38289339 ttgttcccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccacttattcatctttaaggt 38289240  T
Q  189 gaatttctctaaccacta 206  Q
    ||||||||||| ||||||    
T  38289239 gaatttctctagccacta 38289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 43413959 - 43413870
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||| ||||||||| |||||||||||||| |||| |||| || |||||| ||||||| || || |||||||||||||||| |||||||||    
T  43413959 ggataatgcacaatttgtgcaggggctggggttcgaatcccaaacaccccacttattcatctttaaggtgaatttctctagccactaggc 43413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 4259851 - 4259970
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||| ||||| ||||  |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||| ||| ||||||| || || ||||||    
T  4259851 tgtccgcatgagcttaactcatttggtaagggataatgcacaatatgtgcaggggccggggttccaaccccggactccccacttattcatctttaaggtg 4259950  T
Q  190 aatttctctaaccactaggc 209  Q
    |||||||||| |||||||||    
T  4259951 aatttctctagccactaggc 4259970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 23139064 - 23139177
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttatttta--aa 185  Q
    ||||||||||||| ||||| ||||||| ||| |||| ||||||||| ||||||||||| |  |||| ||   ||||||||| ||||||| ||||||  ||    
T  23139064 attgtccccatgagcttagctcatttgacaagggataatgcacaatgtgtgcaggggccgaggttcgaacaccagacaccccacttattcattttattaa 23139163  T
Q  186 ggtgaatttctcta 199  Q
    ||||||||||||||    
T  23139164 ggtgaatttctcta 23139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 44828536 - 44828429
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggt 188  Q
    ||||||||||| ||||| |||||||| || |||| ||||||||| ||||||||| |||| |||| || | ||||||||  ||||||| || ||| |||||    
T  44828536 tgtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagggtctggggttcgaaccccagacaccacacttattcatcttttaaggt 44828437  T
Q  189 gaatttct 196  Q
    ||||||||    
T  44828436 gaatttct 44828429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 22652680 - 22652791
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    |||||| ||||| |||||||  || |||| ||||| ||| ||||||||||| || |||| || | | ||||||| | ||||| || ||||||||||||||    
T  22652680 ccatgagcttagctcatttgataagggataatgcataatttgtgcaggggccggtgttcgaaccccggacaccccaattattcatgttaaaggtgaattt 22652779  T
Q  195 ctctaaccacta 206  Q
    ||||| ||||||    
T  22652780 ctctagccacta 22652791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 34038013 - 34037934
Alignment:
Q  128 cacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||||||||||||||  ||||||| |||| |||||| || ||||||| || || || |||||||| ||||||||||||    
T  34038013 cacaatatgtgcagggggcggagttcgaatcccagacatcccacttattcatctttaaagtgaatttttctaaccactag 34037934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 13906728 - 13906674
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| || |||| |||||||||||||||||||||    
T  13906728 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 13906674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 33820486 - 33820384
Alignment:
Q  102 cttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    ||||| |||||||| |  |||| || |||||| ||||||| ||  || |||| |||| ||||||||| | ||||| || |||||||||||||||||||||    
T  33820486 cttagctcatttggtatgggataatacacaatttgtgcagaggtcggggttcgaatcccagacaccccaattattcatcttaaaggtgaatttctctaac 33820387  T
Q  202 cac 204  Q
    |||    
T  33820386 cac 33820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 5598086 - 5598127
Alignment:
Q  144 gctggagttcaaatctcagacaccctacttatttattttaaa 185  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  5598086 gctggagttcgaatctcagacaccccacttatttattttaaa 5598127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 5637189 - 5637148
Alignment:
Q  144 gctggagttcaaatctcagacaccctacttatttattttaaa 185  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  5637189 gctggagttcgaatctcagacaccccacttatttattttaaa 5637148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 8350429 - 8350546
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggtg 189  Q
    |||||||| | ||||  |||||||| ||  ||| || |||||||| ||||||||| ||||||| || ||| ||||||| ||||||| || ||| ||| ||    
T  8350429 gtccccataagcttaactcatttggtaagtgataatacacaatatatgcaggggccggagttcgaacctcggacaccccacttattcatcttttaagatg 8350528  T
Q  190 aatttctctaaccactag 207  Q
    ||||| ||||||||||||    
T  8350529 aatttatctaaccactag 8350546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 41845533 - 41845416
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    ||||| |||||| ||||| |||||||| || |||| |||||||||||||||||||   || |||| || | |  |||||||| ||||| || || |||||    
T  41845533 ttgtctccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggatcggggttcgaaccccgaacaccctatttattcatctttaaggt 41845434  T
Q  189 gaatttctctaaccacta 206  Q
    |||||||| || ||||||    
T  41845433 gaatttctttagccacta 41845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 45536714 - 45536827
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    |||||||  |||| |||||||  || |||| ||||| ||| ||||||||||| ||||||| || | | ||||||| ||||||| || ||||  |||||||    
T  45536714 cccatgaggttaggtcatttgataagggataatgcaaaatttgtgcaggggccggagttcgaaccccggacaccccacttattcatcttaatagtgaatt 45536813  T
Q  194 tctctaaccactag 207  Q
    |||||| |||||||    
T  45536814 tctctagccactag 45536827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 36104007 - 36103939
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 176  Q
    |||||||| ||||||| ||||||||||||||||||||| || |||| || | || |||||| |||||||    
T  36104007 tcatttggtaaaggataatgcacaatatgtgcaggggccggggttcgaaccccaaacaccccacttatt 36103939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 39104612 - 39104715
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 202  Q
    |||| |||||||| || |||| ||||||||||||||||| ||| || |||| || | | ||||||| ||||||| || || |||||| ||||||||| ||    
T  39104612 ttagctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccc-acttattcatctttaaggtggatttctctagcc 39104710  T
Q  203 actag 207  Q
    |||||    
T  39104711 actag 39104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 19733171 - 19733056
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||| | ||||| |||||||| || |||| ||||| ||||| ||||||||  || |||| |||| |  |||||  | ||||| || || |||||||    
T  19733171 gtccccataagcttagctcatttggtaagggataatgcataatatatgcaggggtcggggttcgaatcccgaacacctaaattattcatctttaaggtga 19733072  T
Q  191 atttctctaaccacta 206  Q
    ||||||||||||||||    
T  19733071 atttctctaaccacta 19733056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 10161957 - 10162019
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttc 153  Q
    |||||||||| ||||| |||| ||| || |||| |||||||||||||||||||| ||| ||||    
T  10161957 gtccccatgagcttagctcatctggtaagggataatgcacaatatgtgcaggggttggggttc 10162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 5904464 - 5904368
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 199  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||  || |||| || | | |||| || ||||||| || || ||| ||||||||||||    
T  5904464 ttagctcatttggtaaaagataatgcacaatatgtgcaggggacggggttcgaaccccggacatcccacttattcatctttaagatgaatttctcta 5904368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 6938669 - 6938625
Alignment:
Q  162 gacaccctacttatttattttaaaggtgaatttctctaaccacta 206  Q
    ||||||||| ||||||||||| ||  |||||||||||||||||||    
T  6938669 gacaccctatttatttatttttaaaatgaatttctctaaccacta 6938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 29114093 - 29114149
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||| ||||||||||||| |||||||  || |||| ||||||||| |||||||||||    
T  29114093 ttgttcccatgaacttagctcatttgataagggataatgcacaatttgtgcaggggc 29114149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 29322078 - 29321962
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||| ||||||||||| |||||||| || |||| |||||||||||||||||||||||| |||| || | |||||| || |||||||||| || |||||||    
T  29322078 gtcctcatgaacttagatcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttatttatctttaaggtga 29321979  T
Q  191 atttctctaaccactag 207  Q
    ||||||||| |||||||    
T  29321978 atttctctagccactag 29321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 6228363 - 6228244
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||    
T  6228363 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 6228264  T
Q  190 aatttctctaaccactaggc 209  Q
    |||||||||| |||||||||    
T  6228263 aatttctctagccactaggc 6228244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 18903469 - 18903351
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| ||||||||||| |||| || |||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||    
T  18903469 gtccccatgagcttagctcatttggcaagggataatacacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtga 18903370  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  18903369 atttctctagccactaggc 18903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 4854411 - 4854292
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 187  Q
    ||||||||||||| ||||| ||||||||||| |||| ||| ||||| ||||||||||| || |||| || | | ||||||| ||||||| || || ||||    
T  4854411 attgtccccatgagcttagctcatttggcaagggataatgtacaatgtgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaagg 4854312  T
Q  188 tgaatttctctaaccactag 207  Q
    | ||||||||||||||||||    
T  4854311 taaatttctctaaccactag 4854292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 19748103 - 19748209
Alignment:
Q  102 cttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    ||||| |||||||| || |||| |||||||||||||||||||  ||| |||| || | | ||||||| ||||||| ||||| ||||||||||||||| ||    
T  19748103 cttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccacggacaccccacttattcatttt-aaggtgaatttctctgac 19748201  T
Q  202 cactaggc 209  Q
    ||||||||    
T  19748202 cactaggc 19748209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 25091189 - 25091086
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 202  Q
    ||||||||||||||||||||| ||||||||| ||| ||||| | || ||||  | ||| ||||||| ||||||| || |||||||||| |||||||| ||    
T  25091189 ttagttcatttggcaaaggataatgcacaatttgttcagggaccggggttcgtacctcggacaccccacttattcatcttaaaggtgattttctctagcc 25091090  T
Q  203 acta 206  Q
    ||||    
T  25091089 acta 25091086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 20415663 - 20415546
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    |||||||||  |||| |||||| | || |||| |||||||||||||||||||||  | |||| || | | ||||||| ||||||| || || ||||||||    
T  20415663 tccccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaaccccggacaccccacttattcatctttaaggtgaa 20415564  T
Q  192 tttctctaaccactaggc 209  Q
    |||||||| |||||||||    
T  20415563 tttctctagccactaggc 20415546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 31637366 - 31637451
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccact 205  Q
    |||| ||||||||||| ||||||||  || |||| |  ||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  31637366 ggataatgcacaatatttgcaggggtcggggttcgagcctcggacaccctacttatttatttttaaggtgaatttctctagccact 31637451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 17216953 - 17217069
Alignment:
Q  93 ccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaat 192  Q
    |||||||| ||||| |||||||| || |||| ||||| |||||||| |||||  ||||||| ||   | ||||||| ||||||| || || |||||||||    
T  17216953 ccccatgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctttaaggtgaat 17217052  T
Q  193 ttctctaaccactaggc 209  Q
    ||||||| |||||||||    
T  17217053 ttctctagccactaggc 17217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 15717115 - 15717061
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| || |||| |||||||||||||||||||||    
T  15717115 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 15717061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 24794991 - 24794881
Alignment:
Q  97 atgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttct 196  Q
    |||| ||||| |||||||| || |||| |||||||||||||||||||| |||  ||| || | | |||| || ||||||| || || ||| |||||||||    
T  24794991 atgagcttagctcatttggtaagggataatgcacaatatgtgcaggggttgggattcgaaccccggacatcccacttattcatatttaagatgaatttct 24794892  T
Q  197 ctaaccactag 207  Q
    ||| |||||||    
T  24794891 ctagccactag 24794881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 11552861 - 11552980
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 187  Q
    ||||||||| | | ||||| ||||||||||| |||| | | ||||| ||||||||||| || |||| || | ||| ||||| ||||||| || || ||||    
T  11552861 attgtccccttaagcttagctcatttggcaagggataacgtacaatgtgtgcaggggccggggttcgaaccccaggcaccccacttattcatctttaagg 11552960  T
Q  188 tgaatttctctaaccactag 207  Q
    | ||||| |||| |||||||    
T  11552961 taaatttttctagccactag 11552980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 18618643 - 18618556
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 176  Q
    |||||||||||| ||||| |||||||| ||| ||| |||||||||||||  | ||| ||| |||| |||| | ||||||| |||||||    
T  18618643 ttgtccccatgagcttagctcatttggtaaaagataatgcacaatatgtataagggttggggttcgaatcccggacaccccacttatt 18618556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 28536269 - 28536154
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| ||||||||||| |||  ||  ||||||||||||||||| || |||  |||||| |||||   ||||||| || || | ||||||    
T  28536269 tccccatgagcttagctcatttggcaagggaaaatatacaatatgtgcaggggccggtgtttgaatctcggacacttcacttattcatctttacggtgaa 28536170  T
Q  192 tttctctaaccactag 207  Q
    ||| | ||||||||||    
T  28536169 tttatttaaccactag 28536154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 21874306 - 21874228
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaag 186  Q
    |||||||| || |||| |||||||||||||||| |||| ||||||| |||| |  |||||  ||||||| |||||||||    
T  21874306 tcatttggtaagggataatgcacaatatgtgcatgggcaggagttcgaatcccgaacacctcacttattcattttaaag 21874228  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 25045737 - 25045798
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaa 156  Q
    |||||| ||||| |||||||| || |||| || ||||||||||||||||||||  |||||||    
T  25045737 ccatgagcttagctcatttggtaagggataattcacaatatgtgcaggggctgaggttcaaa 25045798  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 32470689 - 32470786
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagaca-ccctacttatttattttaaaggtgaatttctcta 199  Q
    ||||||| ||||| |||| || ||||| ||||| |||||||||||  |||  || |||||||| ||||||||||| |  || ||||||||||||||||    
T  32470689 ttagttcctttggtaaagaataatgcataatatatgcaggggctgaggtttgaacctcagacacccctacttattcacctttaaggtgaatttctcta 32470786  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 3974468 - 3974552
Alignment:
Q  125 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    ||||| ||||||||||||||  || |||| ||  || ||| ||| ||||||| || || |||||||||||||||||| |||||||    
T  3974468 atgcagaatatgtgcaggggtcggggttcgaacttcggactccccacttattcatctttaaggtgaatttctctaactactaggc 3974552  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 33528309 - 33528189
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||| ||||||| || || |||||    
T  33528309 ttgtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggt 33528210  T
Q  189 gaatttctctaaccactaggc 209  Q
    ||||||||||| |||||||||    
T  33528209 gaatttctctagccactaggc 33528189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 2259150 - 2259257
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| |||||||||| | |||||| |||||||||| || || ||||| |    
T  2259150 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcaaaccccagaca-cctacttattcatctttaaggtaa 2259248  T
Q  191 atttctcta 199  Q
    |||| ||||    
T  2259249 atttatcta 2259257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 47864631 - 47864747
Alignment:
Q  93 ccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaat 192  Q
    |||||| | ||||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | | ||||||| ||||||| || || |||||||||    
T  47864631 ccccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaaggtgaat 47864730  T
Q  193 ttctctaaccactaggc 209  Q
    ||||||| |||||||||    
T  47864731 ttctctagccactaggc 47864747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 16141456 - 16141337
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| | |||||||||||  || |||| ||||||||||||| || ||||||| |||| ||   ||||||||| ||||||| || ||||||||     
T  16141456 tgtccccatgagcatagttcatttgataagggataatgcacaatatgtacaagggctggggttcgaactccagacaccccacttattcatcttaaaggta 16141357  T
Q  190 aatttctctaaccactaggc 209  Q
    ||||| ||||||||||||||    
T  16141356 aatttatctaaccactaggc 16141337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 38668138 - 38668237
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||||| || |||| |||||||||| ||| ||||| ||||||| ||||| | ||||||| ||||||| || || |||||||||||||||| |||||||    
T  38668138 tcatttggtaagggataatgcacaatacgtgtaggggttggagttgaaatccctgacaccccacttattcatctttaaggtgaatttctctagccactag 38668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 50381706 - 50381825
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| ||||  |||||||| || |||| ||||||||||| ||||||||  || |||| |||| | ||||||| ||||||| || || ||||||    
T  50381706 tgtccccatgagcttaactcatttggtaagggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaaggtg 50381805  T
Q  190 aatttctctaaccactaggc 209  Q
    |||||||||| ||| |||||    
T  50381806 aatttctctagccattaggc 50381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 39739270 - 39739383
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||| ||||| |||||||| || |||| |||||||||||||||||||  ||| |||| || | | ||||||  ||||||| || || ||||||||||    
T  39739270 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccccggacacctcacttattcatctttaaggtgaatt 39739369  T
Q  194 tctctaaccactag 207  Q
    |||||| |||||||    
T  39739370 tctctagccactag 39739383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 46247253 - 46247363
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacacc---ctacttatttattttaaagg 187  Q
    |||||||||| ||||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||   || |||||| || || ||||    
T  46247253 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttcttattcatctttaagg 46247352  T
Q  188 tgaatttctct 198  Q
    |||||||||||    
T  46247353 tgaatttctct 46247363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 986023 - 985905
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||  ||||  | |||||| || | || ||||||||| |||||||||||||| ||   |||| | ||||||| ||||||| || ||||||||    
T  986023 ttgtccccatgtgcttaacttatttggtaaggcataatgcacaatttgtgcaggggctggggtctgaatcccggacaccccacttattcatcttaaaggt 985924  T
Q  189 gaatttctctaaccactag 207  Q
    ||||||||||| |||||||    
T  985923 gaatttctctagccactag 985905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 11483605 - 11483714
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| ||||| |||||||| || |||| ||||| |||||||||||||||  | |||| ||   | ||||||| ||||||| || || ||||||    
T  11483605 tgtccccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccagggttcgaactccggacaccccacttattcatctttaaggtg 11483704  T
Q  190 aatttctcta 199  Q
    ||||||||||    
T  11483705 aatttctcta 11483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 25165434 - 25165555
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagaca-ccctacttattta---ttttaaagg 187  Q
    ||||||||| ||||| |||||||| || |||| ||||||||||||||||||| | || |||| || | | |||| ||| ||||||| |   |||| ||||    
T  25165434 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggaccggggttcgaaccccggacacccccacttattcatcttttttaagg 25165533  T
Q  188 tgaatttctctaaccactaggc 209  Q
    |||||||||||| |||||||||    
T  25165534 tgaatttctctagccactaggc 25165555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 29226320 - 29226427
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| |||||||| || |||| |  |||||||||||||||||| || |||| || | |  |||||| ||||||| || || ||||||||    
T  29226320 tccccatgagcttagctcatttggtaagggataacacacaatatgtgcaggggccggggttcgaaccccgtacaccccacttattcatctttaaggtgaa 29226419  T
Q  192 tttctcta 199  Q
    ||||||||    
T  29226420 tttctcta 29226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 31435574 - 31435487
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||| |||||||||||||| ||||| ||| |||| || ||| |||| || ||||||| || || |||||||||||||||| |||||||    
T  31435574 ggataatgcacaatatgtgtaggggttggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctctagccactag 31435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 33830453 - 33830358
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacca 203  Q
    |||||||| ||  ||| ||||||||||| ||||||||||  ||||  ||   ||||||||| ||||||| ||||| ||||||||||||||||||||    
T  33830453 tcatttggtaagagataatgcacaatatatgcaggggctctagtttgaactccagacaccccacttattcatttttaaggtgaatttctctaacca 33830358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 9321049 - 9320943
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 202  Q
    |||| |||||||  || |||| ||| ||||| |||||||||| ||| |||| || | |  |||||| ||||||| || |||||| |||||||||||||||    
T  9321049 ttagctcatttgataagggataatgtacaatttgtgcaggggttggggttcgaaacccgaacaccccacttattcatcttaaagatgaatttctctaacc 9320950  T
Q  203 actaggc 209  Q
    |||||||    
T  9320949 actaggc 9320943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 27817169 - 27817052
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    ||||| |||| ||||  |||||||| || |||| ||||||||| ||||||||||| ||||||| || | | ||||||| | ||||| || || ||| |||    
T  27817169 gtccctatgagcttacctcatttggtaagggataatgcacaatttgtgcaggggccggagttcgaa-cccggacaccccatttattcatctttaagttga 27817071  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  27817070 atttctctagccactaggc 27817052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 44062109 - 44062028
Alignment:
Q  125 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    ||||||||||||||||||||| ||||||| || | | ||||||| ||||||| || || ||||||||| |||||| |||||||    
T  44062109 atgcacaatatgtgcaggggccggagttcgaa-ccccgacaccccacttattcatctttaaggtgaatgtctctagccactag 44062028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 55426107 - 55426161
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| ||||||| |||||||||||||||| ||||    
T  55426107 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgcatgggc 55426161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 29645889 - 29645813
Alignment:
Q  131 aatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    ||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||    
T  29645889 aatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactag 29645813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 34225187 - 34225243
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggct 146  Q
    |||| |||||| ||||| |||||||| || |||| ||||||||||||||||||||||    
T  34225187 tgtctccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggct 34225243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 40415605 - 40415554
Alignment:
Q  150 gttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    ||||||||||||||||||  ||||||| | ||| ||||||||||||||||||    
T  40415605 gttcaaatctcagacacctcacttattcacttttaaggtgaatttctctaac 40415554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 22602293 - 22602187
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 202  Q
    |||| |||||||| || | || |||||||||||||| |||||  |  |||| |||| |||||| |  ||||||| || || |||||||||||||||| ||    
T  22602293 ttagctcatttggtaaggaataatgcacaatatgtgtaggggacgaggttcgaatcccagacatcgcacttattcatctttaaggtgaatttctctagcc 22602194  T
Q  203 actaggc 209  Q
    |||||||    
T  22602193 actaggc 22602187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 30162650 - 30162704
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| || |||| |||||||||||||||| ||||    
T  30162650 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaagggc 30162704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 1084130 - 1084077
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcagggg 144  Q
    |||||||||| ||||| |||||||  ||||||| ||| ||||||||||||||||    
T  1084130 gtccccatgagcttagctcatttgttaaaggataatgtacaatatgtgcagggg 1084077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 48433812 - 48433694
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || ||||||| | | ||||||| ||||||| || || |||||||    
T  48433812 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatctttaaggtga 48433713  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  48433712 atttctctagccactaggc 48433694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 12166079 - 12166183
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    |||||||||||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||| ||||||| || || |||||||||||    
T  12166079 ccatgaacttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggtgaattt 12166178  T
Q  195 ctcta 199  Q
    |||||    
T  12166179 ctcta 12166183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 40273813 - 40273922
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||    
T  40273813 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 40273912  T
Q  190 aatttctcta 199  Q
    ||||||||||    
T  40273913 aatttctcta 40273922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 38378211 - 38378327
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    |||||||||||  |||||| |||||| || |||| ||||||||||||||||||||| || |||  || | | ||||||| ||||||| ||||| ||||||    
T  38378211 tgtccccatgagtttagtttatttggtaagggataatgcacaatatgtgcaggggccggggtttgaaccccggacaccccacttattcatttttaaggtg 38378310  T
Q  190 aatttctctaaccacta 206  Q
    |||||||||| ||||||    
T  38378311 aatttctctacccacta 38378327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 23824695 - 23824577
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||||||| || |||| |||||||||||||||| |||| |  |||| || | | ||||||||||||||| || || |||||    
T  23824695 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcatgggccgaggttcgaa-cccggacaccctacttattcatctttaaggt 23824597  T
Q  189 gaatttctctaaccactagg 208  Q
    ||||||||||| ||||||||    
T  23824596 gaatttctctagccactagg 23824577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 43440683 - 43440798
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||| ||||||||||| |||||| || |||| ||||||||||||||||| ||  || |||| |||  ||||||||| ||||||| || || ||||||||    
T  43440683 tccccgtgaacttagtttatttggtaagggataatgcacaatatgtgcagaggtcggggttcgaattccagacaccccacttattcatctttaaggtgaa 43440782  T
Q  192 tttctctaaccactag 207  Q
    |||||||| |||||||    
T  43440783 tttctctagccactag 43440798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 3961493 - 3961392
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||||| ||||||| ||||||||| ||||||| ||| || |||| || | | |||| || ||||||| |||||||||||||||||||||| | |||||    
T  3961493 tcatttggtaaaggataatgcacaatttgtgcagaggccggggttcgaaccccggacatcccacttattcattttaaaggtgaatttctctagctactag 3961394  T
Q  208 gc 209  Q
    ||    
T  3961393 gc 3961392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 33248904 - 33248799
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||||||||||||||| ||||| ||  || |||| || | | ||||||||||||||| || || |||||||    
T  33248904 gtccccatgagcttagctcatttggtaagggatgatgcacaatatatgcagaggtcggggttcgaaccccggacaccctacttattcatctttaaggtga 33248805  T
Q  191 atttct 196  Q
    ||||||    
T  33248804 atttct 33248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 27454007 - 27454123
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaat 192  Q
    ||||||| ||||| |||||||| || |||| ||||||||| ||||||||||  |  |||| || ||| ||||||| ||||||| || ||||| |||||||    
T  27454007 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttattcatcttaaaaggtgaat 27454106  T
Q  193 ttctctaaccactaggc 209  Q
    ||||||| |||||||||    
T  27454107 ttctctagccactaggc 27454123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 48619807 - 48619904
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 206  Q
    |||||||| ||||||| ||| |||||||||||||||| ||| |||| ||  |||||||| | ||||||| || || |||||||||||||||| ||||||    
T  48619807 tcatttggtaaaggataatgtacaatatgtgcaggggttgg-gttcgaacttcagacactccacttattcatctttaaggtgaatttctctagccacta 48619904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 31793461 - 31793578
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||| ||||| ||||| |||||||  || |||| ||||||||||||||||||||  || |||| || | | ||||||| ||||||| || || ||||||     
T  31793461 gtccacatgagcttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttattcatctttaaggtgg 31793560  T
Q  191 atttctctaaccactagg 208  Q
    ||||||||| ||||||||    
T  31793561 atttctctagccactagg 31793578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 34322127 - 34322018
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||| | | ||| |||||||  || |||| ||||||||||||||||||| |||| |||  |||| ||||||||| | ||||| || ||||| |||    
T  34322127 tgtccccataagcatagctcatttgataagggataatgcacaatatgtgcagggactggggtttgaatcccagacaccccatttattcatcttaaacgtg 34322028  T
Q  190 aatttctcta 199  Q
    ||||||||||    
T  34322027 aatttctcta 34322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 24029978 - 24030086
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    ||||||||||  |||| |||||||  || |||| |||||||||||||| |||||| || |||| || | ||||||||| | ||||| || || |||||||    
T  24029978 gtccccatgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttattcatctttaaggtga 24030077  T
Q  191 atttctcta 199  Q
    |||||||||    
T  24030078 atttctcta 24030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 26456107 - 26455991
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||  ||||||||||||||||||| |||  |||  || | ||||||| | | ||||| |  ||||||||||    
T  26456107 gtccccatgagcttagctcatttggtaagggacaatgcacaatatgtgcagggactgacgtttgaaccccagacactccagttattcaccttaaaggtga 26456008  T
Q  191 atttctctaaccactag 207  Q
    ||||||||| |||||||    
T  26456007 atttctctagccactag 26455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 41468835 - 41468934
Alignment:
Q  97 atgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttct 196  Q
    |||| |||||||||||||| || || | ||||||||| |||||| |||   ||||||||| |||| |||||||||||||| || ||||| ||||||||||    
T  41468835 atgagcttagttcatttggtaaggggtaatgcacaatttgtgcaagggtcagagttcaaacctcaaacaccctacttattcatcttaaa-gtgaatttct 41468933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 42554631 - 42554743
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    |||||| ||||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | | || |||| ||||||| || || | |||||||||    
T  42554631 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggatacccgacttattcatctttatggtgaattt 42554730  T
Q  195 ctctaaccactag 207  Q
    | ||| |||||||    
T  42554731 ccctagccactag 42554743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 4956174 - 4956076
Alignment:
Q  111 tttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    ||||| || |||| ||||||||||||||||||||  || |||| || |   ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  4956174 tttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccctggacaccccacttattcatctttaaggtgaatttctctagccactaggc 4956076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 3889898 - 3889785
Alignment:
Q  96 catgaacttagttcatttggcaaaggatgatgcacaatatgtgcagggg-ctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    ||||| ||||| ||||||| ||| |||| ||| ||||||| |||||||| |  | |||| || | | ||||||| ||||||| || ||||||||||||||    
T  3889898 catgagcttagctcatttgacaagggataatgtacaatatatgcagggggccagggttcgaaccccggacaccccacttattcatcttaaaggtgaattt 3889799  T
Q  195 ctctaaccactagg 208  Q
    ||||||||| ||||    
T  3889798 ctctaaccattagg 3889785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 46266660 - 46266777
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| ||||  |||||||| || |||| ||||||||| ||||| ||||  || |||| || ||   ||| || ||||||| || |||||||||    
T  46266660 tgtccccatgagcttaactcatttggtaagggataatgcacaatttgtgcgggggacggggttcgaaccttgaacatcccacttattcatcttaaaggtg 46266759  T
Q  190 aatttctctaaccactag 207  Q
    ||||| ||||||||||||    
T  46266760 aatttatctaaccactag 46266777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 28914908 - 28914861
Alignment:
Q  162 gacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||||    
T  28914908 gacaccccacttattcactttaaaggtgaatttctctagccactaggc 28914861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 42338348 - 42338266
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctactta 174  Q
    ||||||||| ||||| |||||||| || | || ||||||||||||||||||||  || |||| |||| | ||||||| |||||    
T  42338348 tccccatgagcttagctcatttggtaaggaataatgcacaatatgtgcaggggacggggttcgaatcccggacaccccactta 42338266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 24315444 - 24315340
Alignment:
Q  102 cttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    ||||| |||||| | || |||| |||||||||||||| |||||  || |||| || | || |||  | ||||||||||||||| |||||| |||||||||    
T  24315444 cttagctcatttagtaatggataatgcacaatatgtgtaggggtcggggttcgaaccccatacattccacttatttattttaa-ggtgaacttctctaac 24315346  T
Q  202 cactag 207  Q
    ||||||    
T  24315345 cactag 24315340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 37563282 - 37563237
Alignment:
Q  162 gacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  37563282 gacaccctacttattcatttttaagatgaatttctctaaccgctag 37563237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 1575686 - 1575766
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacacccta 170  Q
    ||||||||||| ||||  |||||||| || |||| || |||||||||| |||||| ||| |||| || | |||||||||||    
T  1575686 tgtccccatgagcttaactcatttggtaagggataatacacaatatgtacaggggttggggttcgaaccccagacacccta 1575766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 36528321 - 36528205
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||  |||||||| || |||| |||||||||||||  |||||  ||||||| || | | |||| || || |||| ||||| |||||||    
T  36528321 gtccccatgagcttaactcatttggtaagggataatgcacaatatgtataggggtcggagttcgaaccccggacatcccacctattcatttttaaggtga 36528222  T
Q  191 atttctctaaccactag 207  Q
    |||| | || |||||||    
T  36528221 atttatttagccactag 36528205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 42841843 - 42841775
Alignment:
Q  131 aatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 199  Q
    |||||||||| || | || |||| || | ||||||||| ||||||| || |||||||||||||||||||    
T  42841843 aatatgtgcaaggaccggggttcgaaccccagacaccccacttattcatcttaaaggtgaatttctcta 42841775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 22341961 - 22341846
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||||||||  |||||||| ||| ||| |||||||||||||| ||||| ||| ||||||||| || |||||| |||| || || |||||||||||||    
T  22341961 cccatgaacttaaatcatttggtaaaagataatgcacaatatgtgtaggggttggggttcaaatcccaaacaccccacttgttcatcttaaaggtgaatt 22341862  T
Q  194 tctctaaccactaggc 209  Q
    ||||||||| ||||||    
T  22341861 tctctaaccgctaggc 22341846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 50815700 - 50815818
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||  ||||||| ||||||||| ||||||||||| || |||| || | | ||||||| || |||| || ||||||||||    
T  50815700 gtccccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccggacaccccacatattcatcttaaaggtga 50815799  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  50815800 atttctctagccactaggc 50815818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 51974738 - 51974858
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||||||| || |||| ||||||||||||||||||||  ||  ||| || ||| |||| || |||||||||| || |||||    
T  51974738 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacctcggacatcccacttatttatctttaaggt 51974837  T
Q  189 gaatttctctaaccactaggc 209  Q
    |||||| |||| |||||||||    
T  51974838 gaatttatctagccactaggc 51974858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 40407062 - 40406944
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcagggg-ctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    ||||||||| ||||| |||||||| || |||| |||||||||||||||||||| | || |||| || | | ||||||| ||||||| || || |||||||    
T  40407062 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccgggggttcgaaccccggacaccccacttattcatctttaaggtga 40406963  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  40406962 atttctctagccactaggc 40406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 2832175 - 2832056
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||| ||| || || ||||||||||||||||||||||  || |||| || | || |||||| ||||||| || || |||||    
T  2832175 ttgtccccatgagcttagctcatctggtaaggggtgatgcacaatatgtgcaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggt 2832076  T
Q  189 gaatttctctaaccactagg 208  Q
    ||||| ||||| ||||||||    
T  2832075 gaattcctctagccactagg 2832056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 11491310 - 11491203
Alignment:
Q  102 cttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 201  Q
    ||||| ||||||| ||| |||| ||||| ||| ||||||||||| ||||||| || | | ||||||| ||||||| || || |||||||||||||||| |    
T  11491310 cttagctcatttgacaagggataatgcataatttgtgcaggggccggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagc 11491211  T
Q  202 cactaggc 209  Q
    ||||||||    
T  11491210 cactaggc 11491203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 16556447 - 16556562
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||| ||||| |||||||| || |||| ||||||||||||||||||||  || |||| || | |  |||||| ||||||| || || ||||||||||    
T  16556447 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccacttattcatctttaaggtgaatt 16556546  T
Q  194 tctctaaccactaggc 209  Q
    |||||| |||||||||    
T  16556547 tctctagccactaggc 16556562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 35909127 - 35909015
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggag-ttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    |||||| ||||| |||||| | || |||| ||||||||||| ||||||||  |||| ||| |||| ||||||||| |||||||||| || ||||||||||    
T  35909127 ccatgagcttagctcattttgtaagggataatgcacaatatatgcaggggtcggaggttcgaatcccagacaccccacttatttatctttaaggtgaatt 35909028  T
Q  194 tctctaaccacta 206  Q
    | || ||||||||    
T  35909027 tttccaaccacta 35909015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 46283115 - 46283223
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||  |||||||| || |||| ||||||||||||||||| ||| || |||| || | | ||||||| ||||||| || || |||||||    
T  46283115 gtccccatgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccccacttattcatctttaaggtga 46283214  T
Q  191 atttctcta 199  Q
    |||||||||    
T  46283215 atttctcta 46283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 23448966 - 23449059
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaa 184  Q
    |||||||||||||||| | |||||| || |||| |||||||||||||||||||| ||| |||| || | |  |||||| ||||||| |||||||    
T  23448966 gtccccatgaacttagcttatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccgaacaccccacttattcattttaa 23449059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 36993037 - 36993152
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||| ||||| |||||||  || |||| |||||||||||||| ||||| ||| |||  || | | ||||||| | ||||| || || ||||||||||    
T  36993037 cccatgagcttagctcatttgataagggataatgcacaatatgtgaaggggttggggtttgaaccccggacaccccaattattcatctttaaggtgaatt 36993136  T
Q  194 tctctaaccactaggc 209  Q
    |||||| |||||||||    
T  36993137 tctctagccactaggc 36993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 27862934 - 27862848
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 176  Q
    ||||||||||| ||||| |||||||  || |||| ||||||||| |||||||||||||| |||| || | | ||||||| |||||||    
T  27862934 tgtccccatgagcttagctcatttgataagggataatgcacaatttgtgcaggggctggggttcgaaccccggacaccccacttatt 27862848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 53096592 - 53096518
Alignment:
Q  125 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggtgaatttctct 198  Q
    ||||||||||||||||||| || | |||| || ||||||||||| ||||||| ||  ||||||||||||||||||    
T  53096592 atgcacaatatgtgcagggactagtgttcgaacctcagacaccccacttattcatccttaaaggtgaatttctct 53096518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 8716493 - 8716442
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcag 141  Q
    ||||||||||||||||| |||||||  || |||| |||||||||||||||||    
T  8716493 tgtccccatgaacttagctcatttgataagggataatgcacaatatgtgcag 8716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 25234931 - 25234844
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||| |||||||||| ||| ||||| ||  |||| || | ||||||||| | ||||| || || ||||||||||||||||||||||||    
T  25234931 ggataatgcacaataagtgtaggggttgaggttcgaaccccagacaccccagttattcatctttaaggtgaatttctctaaccactag 25234844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 49607931 - 49607985
Alignment:
Q  153 caaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||||| ||||||||| |||||||||  || |||||||||||||||| |||||||    
T  49607931 caaatcccagacaccccacttatttacctttaaggtgaatttctctagccactag 49607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 45355790 - 45355702
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||| |||||||||||||| |||||  || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  45355790 ggataatgcacaatatgtgtaggggtcggggttcgaaccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggc 45355702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 45369531 - 45369443
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||| |||||||||||||| |||||  || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  45369531 ggataatgcacaatatgtgtaggggtcggggttcgaaccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggc 45369443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 31250141 - 31250258
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||||    
T  31250141 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 31250240  T
Q  192 tttctctaaccactaggc 209  Q
    |||||||| |||||||||    
T  31250241 tttctctagccactaggc 31250258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 38503361 - 38503251
Alignment:
Q  89 ttgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 188  Q
    |||||||||||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||    
T  38503361 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggt 38503262  T
Q  189 gaatttctcta 199  Q
    |||||||||||    
T  38503261 gaatttctcta 38503251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 43227860 - 43227974
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    |||| |||| ||||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||||    
T  43227860 tccctatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 43227959  T
Q  192 tttctctaaccacta 206  Q
    |||||||| ||||||    
T  43227960 tttctctagccacta 43227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 931041 - 930932
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||| | ||| ||||| || || |||  |||||||||||||||||||| ||| |||| || |||||||| || ||||||| || |||||||||    
T  931041 tgtccccatgagcatagctcattcggtaagggacaatgcacaatatgtgcaggggttggggttcgaacctcagacatcccacttattcatcttaaaggtg 930942  T
Q  190 aatttctcta 199  Q
    ||||||||||    
T  930941 aatttctcta 930932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 4395953 - 4395835
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||  |||||||||||| ||| ||||| ||| ||||||||||| ||||||| || | | ||||||| | ||||| || || |||||||    
T  4395953 gtccccatgagcttaactcatttggcaaatgataatgcataatgtgtgcaggggccggagttcgaacccctgacaccccatttattcatctttaaggtga 4395854  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| ||| |||||    
T  4395853 atttctctagccaataggc 4395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 3867852 - 3867741
Alignment:
Q  94 cccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 193  Q
    ||||||||||||| | |||| | |||||||  |||| ||||| ||||||||  || |||| ||||||| |||||| |||||||||||||||| |||||||    
T  3867852 cccatgaacttagcttatttagtaaaggatattgcaaaatatatgcaggggtcggggttcgaatctcaaacaccccacttatttattttaaa-gtgaatt 3867754  T
Q  194 tctctaaccacta 206  Q
    ||||  |||||||    
T  3867753 tctccgaccacta 3867741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 15470724 - 15470608
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    |||||| |||| |||| ||||||||| || |||| |||||||||||||||| ||||||   ||| || | ||||||||| | ||||| || || ||||||    
T  15470724 tgtccctatgagcttaattcatttggtaagggataatgcacaatatgtgcaagggctgagattcgaaccccagacaccccatttattcatctttaaggtg 15470625  T
Q  190 aatttctctaaccacta 206  Q
    |||||||||| ||||||    
T  15470624 aatttctctagccacta 15470608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 1572115 - 1572219
Alignment:
Q  103 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 202  Q
    |||| |||||||  || |||| ||||||| | |||||||||||||| |||| || | | ||| ||| ||||||| || ||||||||||||||||||| ||    
T  1572115 ttagctcatttgttaagggattatgcacattttgtgcaggggctggggttcgaaccccggactccccacttattcatcttaaaggtgaatttctctagcc 1572214  T
Q  203 actag 207  Q
    |||||    
T  1572215 actag 1572219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 17077360 - 17077472
Alignment:
Q  97 atgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttct 196  Q
    |||| ||||| |||||||| || |||| ||||||||| ||||||||||  ||  ||| || | | ||||||| ||||||| || |||||||||||||| |    
T  17077360 atgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaaccccggacaccccacttattcatcttaaaggtgaatttat 17077459  T
Q  197 ctaaccactaggc 209  Q
    ||| |||||||||    
T  17077460 ctagccactaggc 17077472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 12375514 - 12375460
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||||||| ||||| |||||||| || |||| |||||||||||||||||||||    
T  12375514 gtccccatgagcttagctcatttggtaatggataatgcacaatatgtgcaggggc 12375460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 33545459 - 33545371
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||| ||||||||||||||||||||  ||||||  || ||| |||||||  |||||| || || |||||||||||||||| |||||||||    
T  33545459 ggataatgcacaatatgtgcaggggtcggagtttgaacctcggacacccc-cttattcatctttaaggtgaatttctctagccactaggc 33545371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 5039674 - 5039789
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||  |||||||| || |||| ||| |||||||||||| |||| || |||| ||  || ||||||| ||||||| || || ||||| |    
T  5039674 gtccccatgagcttaactcatttggtaa-ggataatgtacaatatgtgcaagggccggggttcgaacttcggacaccccacttattcatctttaaggtaa 5039772  T
Q  191 atttctctaaccactag 207  Q
    ||||||||| |||||||    
T  5039773 atttctctagccactag 5039789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 26671605 - 26671692
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaatttctctaaccactag 207  Q
    |||| ||||||||| |||||||||||||   ||| |||| ||||||||| ||||||| || ||||| |||||||||||||| |||||||    
T  26671605 ggataatgcacaatttgtgcaggggctgagtttcgaatc-cagacaccccacttattcatcttaaaaggtgaatttctctagccactag 26671692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 26943202 - 26943289
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaatttctctaaccactag 207  Q
    |||| ||||||||| |||||||||||||   ||| |||| ||||||||| ||||||| || ||||| |||||||||||||| |||||||    
T  26943202 ggataatgcacaatttgtgcaggggctgagtttcgaatc-cagacaccccacttattcatcttaaaaggtgaatttctctagccactag 26943289  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 87778 - 87888
Alignment:
Q  85 aacattgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaa 184  Q
    |||||||||||||||| || |  |||||||| || |||| ||||||||||| |||| |||  ||||||| ||   ||||||||| |  |||| ||||| |    
T  87778 aacattgtccccatgagctcaactcatttggtaagggataatgcacaatatatgcaagggtcggagttcgaactccagacaccccaactattcattttta 87877  T
Q  185 aggtgaatttc 195  Q
    |||||||||||    
T  87878 aggtgaatttc 87888  T

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Target: scaffold0001 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 419705 - 419823
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| ||||| |||||||| || |||| ||| ||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||    
T  419705 gtccccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtga 419804  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  419805 atttctctagccactaggc 419823  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 33482743 - 33482632
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||||||||| |||||||| || | |||||||||||||| ||||||| | |  |||| || ||||||||||| ||||||| || || ||| ||||    
T  33482743 tccccatgaacttagctcatttggtaaggaatgatgcacaatatatgcagggaccgtggttcgaacctcagacaccccacttattcatctttaagatgaa 33482644  T
Q  192 tttctctaacca 203  Q
    ||||||||||||    
T  33482643 tttctctaacca 33482632  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 34107488 - 34107605
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    ||||| |||| ||||| |||||||| || |||| ||||||||||||||||||||   | ||||||| | | ||||||| ||||||| || || |||||||    
T  34107488 gtccctatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcagggttcaaa-cccggacaccccacttattcatctttaaggtga 34107586  T
Q  191 atttctctaaccactaggc 209  Q
    ||||||||| |||||||||    
T  34107587 atttctctagccactaggc 34107605  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 3330304 - 3330188
Alignment:
Q  90 tgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 189  Q
    ||||||||||  ||||  |||||| | || |||| ||||||||||||||||| ||  ||||||| || | | ||||||| ||||||| || || ||||||    
T  3330304 tgtccccatgtgcttaactcatttagtaagggataatgcacaatatgtgcagaggtcggagttcgaaccccggacaccccacttattcatctttaaggtg 3330205  T
Q  190 aatttctctaaccacta 206  Q
    |||||||||||||||||    
T  3330204 aatttctctaaccacta 3330188  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 17543173 - 17543074
Alignment:
Q  110 atttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||||| || |||| ||||||||||||||||||||| ||||||| ||   | ||||||| ||||||| || || || |||| ||||||||||||||||||    
T  17543173 atttggtaagggataatgcacaatatgtgcaggggccggagttcgaacgccggacaccccacttattcatctttaatgtgactttctctaaccactaggc 17543074  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 25553247 - 25553133
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 190  Q
    |||||||||| |||| ||||||||| || |||| ||||||||||||||||| |  ||| |||| || |||||| || | ||||||| || || ||| |||    
T  25553247 gtccccatgagcttaattcatttggtaagggataatgcacaatatgtgcagagattggggttcgaa-ctcagatactccacttattcatctttaagatga 25553149  T
Q  191 atttctctaaccacta 206  Q
    ||||||||||||||||    
T  25553148 atttctctaaccacta 25553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 31149202 - 31149090
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| | ||| |||||||| || |||| |||||||||||||||||||  ||  |||| || | ||||||||| |||| || || || ||||||||    
T  31149202 tccccatgagcatagctcatttggtaagggataatgcacaatatgtgcagggt-tgaggttcgaaccccagacaccccactttttaatctttaaggtgaa 31149104  T
Q  192 tttctctaaccact 205  Q
    ||||||||||||||    
T  31149103 tttctctaaccact 31149090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 33065353 - 33065241
Alignment:
Q  97 atgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcaga-caccctacttatttattttaaaggtgaatttc 195  Q
    |||| ||||| ||||||||||| |||| ||||||||| |||| |||||  || |||| || ||| || ||||||||||||| || || ||||||||||||    
T  33065353 atgagcttagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggttcgaa-ctccgaacaccctacttattcatctttaaggtgaatttc 33065255  T
Q  196 tctaaccactaggc 209  Q
    |||| |||||||||    
T  33065254 tctagccactaggc 33065241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 41749937 - 41750057
Alignment:
Q  88 attgtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 187  Q
    ||||||||||||| || || ||||||||||| |||| ||||||||| |||| |||||  || |||  || | | ||||||| ||||||| || || ||||    
T  41749937 attgtccccatgagctaagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggtttgaaccccggacaccc-acttattcatctttaagg 41750035  T
Q  188 tgaatttctctaaccactaggc 209  Q
    |||||||||||| |||||||||    
T  41750036 tgaatttctctagccactaggc 41750057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 6866518 - 6866606
Alignment:
Q  108 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttct 196  Q
    |||||||| || |||| ||||||||||||||||||  | ||||||| |||| | ||||||  |||||||||| || |||||||||||||    
T  6866518 tcatttggtaagggataatgcacaatatgtgcaggaaccggagttcgaatcccggacacctcacttatttatctttaaggtgaatttct 6866606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 17376484 - 17376438
Alignment:
Q  163 acaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  17376484 acaccctatttatttatttttaaggtgaatttctctaaccgctaggc 17376438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 5901904 - 5901815
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 209  Q
    |||| ||||||||| | ||||||||| || || |||| | | ||||||| ||||||| || |||||||||||||||| || |||||||||    
T  5901904 ggataatgcacaatttctgcaggggccggggtacaaaccccggacaccccacttattcatcttaaaggtgaatttctttagccactaggc 5901815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 18424249 - 18424136
Alignment:
Q  93 ccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaat 192  Q
    |||||||| ||||| |||||||| || |||  ||||||||||||||||||||| || |||| ||   | |||| || ||||||| || || |||||||||    
T  18424249 ccccatgagcttagctcatttggtaa-gga--atgcacaatatgtgcaggggccggggttcgaactccggacatcccacttattcatctttaaggtgaat 18424153  T
Q  193 ttctctaaccactaggc 209  Q
    ||||||| |||||||||    
T  18424152 ttctctagccactaggc 18424136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 42678397 - 42678310
Alignment:
Q  120 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 207  Q
    |||| |||||||||||| | ||||   ||||||| || | | ||||||| ||||||| || || ||||||||||||||||||||||||    
T  42678397 ggataatgcacaatatgcgtagggatcggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctaaccactag 42678310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 43027149 - 43027264
Alignment:
Q  92 tccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 191  Q
    ||||||||| ||||| |||||||  || |||| ||||||||| ||||| || ||||  |||| || | ||||||||| | ||||| |  || ||||||||    
T  43027149 tccccatgagcttagctcatttgataagggataatgcacaatttgtgcgggtgctgaggttcgaaccccagacaccccatttattcacctttaaggtgaa 43027248  T
Q  192 tttctctaaccactag 207  Q
    |||||||| |||||||    
T  43027249 tttctctagccactag 43027264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 16403522 - 16403572
Alignment:
Q  95 ccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggggc 145  Q
    |||||| ||||| |||||||| || |||| |||||||||||||||||||||    
T  16403522 ccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 16403572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10185414 - 10185459
Alignment:
Q  149 agttcaaatctcagacaccctacttatttattttaaaggtgaattt 194  Q
    ||||||||| || ||||||| |||||||||||||||| ||||||||    
T  10185414 agttcaaatttcggacaccccacttatttattttaaaagtgaattt 10185459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 17801 - 17727
Alignment:
Q  125 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 199  Q
    ||||| ||||| |||||||  |||||||| || ||||||||||  ||||||| ||||| ||||||||||||||||    
T  17801 atgcataatatatgcagggattggagttcgaacctcagacacctcacttattcatttttaaggtgaatttctcta 17727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 121901 - 121849
Alignment:
Q  91 gtccccatgaacttagttcatttggcaaaggatgatgcacaatatgtgcaggg 143  Q
    |||||||||| ||||| |||||||| |  |||| |||||||||||||||||||    
T  121901 gtccccatgagcttagctcatttggtaggggataatgcacaatatgtgcaggg 121849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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