View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15323_low_2 (Length: 347)
Name: NF15323_low_2
Description: NF15323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15323_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 44926815 - 44926479
Alignment:
| Q |
1 |
ggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926815 |
ggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaactt |
44926716 |
T |
|
| Q |
101 |
gctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926715 |
gctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatccc |
44926616 |
T |
|
| Q |
201 |
ctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926615 |
ctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctat |
44926516 |
T |
|
| Q |
301 |
ctcgttttgagagataagctctcgtcttatgttcttc |
337 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
44926515 |
ctcgtttgcagagataagctctcgtcttatgttcttc |
44926479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 65 - 331
Target Start/End: Complemental strand, 44935191 - 44934925
Alignment:
| Q |
65 |
gaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaa |
164 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
44935191 |
gaagtgatggtggatggagagacattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaa |
44935092 |
T |
|
| Q |
165 |
gtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtc |
264 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
44935091 |
gcaatacacctttacatggcttcagaaccccatcacctttgaatagatctggtcttctaaggggaagcataaccgcttcttgaagtgattctttaacatc |
44934992 |
T |
|
| Q |
265 |
atccaatgcaccaatatctgaaaaagtcacccctatctcgttttgagagataagctctcgtcttatg |
331 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||| || |||||||||| |||||||| |
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| T |
44934991 |
atccaaagcaccaatatctgaaaaagtcacctttatctcgtttgcagggataagctcttgtcttatg |
44934925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 45988638 - 45988311
Alignment:
| Q |
4 |
aacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgct |
103 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||| | | ||| |||| |||| ||| ||||| | |||||||||||||||||||||| |
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|
| T |
45988638 |
aacctctgctgctagtgaaaacagagctcggacgttcttttcagcttgtccggaccactttgaattgatggtggacggagagacattgatgaaacttgct |
45988539 |
T |
|
| Q |
104 |
ccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctt |
203 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |
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| T |
45988538 |
ccagattcattagcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggcttcagaagcccatcgcctt |
45988439 |
T |
|
| Q |
204 |
tgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctc |
303 |
Q |
| |
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|||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
45988438 |
tgaatagatatggtcttctaaggggaagcataaccgcttcttgaagtgattctttaatatcatccaaagcaccaatatctgaaaaagtcacttctatctc |
45988339 |
T |
|
| Q |
304 |
gttttgagagataagctctcgtcttatg |
331 |
Q |
| |
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||| || |||||||||| |||||||| |
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| T |
45988338 |
atttgcagggataagctcttgtcttatg |
45988311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 39716201 - 39716282
Alignment:
| Q |
89 |
ttgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaata |
170 |
Q |
| |
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||||||||| |||||||||||||| |||| | |||||||| |||||||| ||||| || ||||| || || ||||| |||| |
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| T |
39716201 |
ttgatgaaatttgctccagcttcagttgctacagcctttgcaagcattgtttttcccgtgccagggggaccgaaaagcaata |
39716282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 11094561 - 11094838
Alignment:
| Q |
4 |
aacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgct |
103 |
Q |
| |
|
|||||| |||||||| | |||||||||||||| ||||||||| | | ||| ||||| ||||| ||| ||||| ||||| || |||||||||||| |
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|
| T |
11094561 |
aaccttagctgctagcgtgaacaaagctcggacattcttttcatcttctccgaaccattttgaagtgatcgtggacatcgagacgttaatgaaacttgct |
11094660 |
T |
|
| Q |
104 |
ccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctt |
203 |
Q |
| |
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|| |||||||| ||||| |||||||| |||||||| ||||| |||||||| || || |||||||||| |||| |||||||||| |||| ||| |||| |
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| T |
11094661 |
cctgcttcattcgcaatcgcctttgctagcattgtttttccggtaccaggtggaccgaaaagtaatatacctctacatggctttagaagtcca---cctt |
11094757 |
T |
|
| Q |
204 |
tgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctg |
284 |
Q |
| |
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|||| | ||||||||||||||||||||||| ||| |||||||| |||||||| | ||||| |||||||| ||||||| |
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| T |
11094758 |
tgaaaaggtctggtcttctaaggggaagcattactagctcttgaagcgattcttttatctcatctaatgcaccgatatctg |
11094838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 32199839 - 32199764
Alignment:
| Q |
220 |
tctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacc |
295 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| || |||| ||||||| ||||| ||||||||||||| |
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|
| T |
32199839 |
tctaaggggaagtataaccgcttcttgaagtgattctttgacatcatttaatgcactaatatatgaaaaagtcacc |
32199764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 2489742 - 2489637
Alignment:
| Q |
86 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
185 |
Q |
| |
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||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
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|
| T |
2489742 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
2489643 |
T |
|
| Q |
186 |
tcagaa |
191 |
Q |
| |
|
| |||| |
|
|
| T |
2489642 |
ttagaa |
2489637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 41591244 - 41591320
Alignment:
| Q |
86 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaa |
162 |
Q |
| |
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||||| |||||||||||||||||||| |||||||| ||||| || |||||||| || || || |||||||| ||||| |
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|
| T |
41591244 |
acattaatgaaacttgctccagcttcctttgcaatggccttcgccagcattgttttcccagttccaggaggcccaaa |
41591320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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