View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_10 (Length: 481)
Name: NF15324_high_10
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 35630439 - 35630881
Alignment:
| Q |
10 |
gagatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35630439 |
gagatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatat |
35630538 |
T |
|
| Q |
110 |
cttcatttgcttgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagag--ggccattcgt-gaataaagctaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
35630539 |
cttcatttgcttgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagagggccattcgtcgaataaagctaa |
35630638 |
T |
|
| Q |
207 |
gttgtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgagaaaagagagtg |
306 |
Q |
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| T |
35630639 |
gttgtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgagcaaagagagtg |
35630738 |
T |
|
| Q |
307 |
attttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaatgaatattctatgtaaaggggaataatagacttaa |
406 |
Q |
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| T |
35630739 |
attttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaatgaatattctatgtaaaggggaataatagacttaa |
35630838 |
T |
|
| Q |
407 |
ctaactgaaaacagaaaaccgaatagtctcaacagaatcctaa |
449 |
Q |
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| T |
35630839 |
ctaactgaaaacagaaaaccgaatagtctcaacagaatcctaa |
35630881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 35636901 - 35637250
Alignment:
| Q |
21 |
ggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatatcttcatttgct |
120 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
35636901 |
ggaagcttcgaagccagcatggccgtcgtaaactccaagaaagagtgcttttctagaggcaacttcaacttggctatgatcttccatagcttcatttgct |
35637000 |
T |
|
| Q |
121 |
tgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagggccattcgt-gaataaagc------taagttgtca |
213 |
Q |
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| T |
35637001 |
tgaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaatcgaacttgcatgagggtc-ttggtcgaataaagccatgttgatgttgtca |
35637099 |
T |
|
| Q |
214 |
ttcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgagaaaagagagtgattttga |
313 |
Q |
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| T |
35637100 |
ttcttccttttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatg--------tgagaaaagagagtgattttga |
35637191 |
T |
|
| Q |
314 |
ttgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaat |
372 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
35637192 |
ttgtaagtgaaagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaat |
35637250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 35633266 - 35633311
Alignment:
| Q |
244 |
ttttcaagccaaggatgcattttggaaggaaaaggaaatgtgattg |
289 |
Q |
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| T |
35633266 |
ttttcaagccaaggatgcatttttgaaggaaaaggaaatgtgattg |
35633311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 35633375 - 35633435
Alignment:
| Q |
405 |
aactaactgaaaacagaaaaccgaatagtctcaacagaatcctaactgaacataactaact |
465 |
Q |
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|||||||||| |||||||||| ||||| ||||||||||| |||||| ||| ||||||||| |
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| T |
35633375 |
aactaactgacaacagaaaactgaataatctcaacagaaacctaacagaatttaactaact |
35633435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 10335957 - 10335592
Alignment:
| Q |
11 |
agatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatatc |
110 |
Q |
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| T |
10335957 |
agatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttagaggcaacttcaatttggctttgatcttccatagt |
10335858 |
T |
|
| Q |
111 |
ttcatttgcttgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagggccattcgt-gaataaagctaagtt |
209 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| || |||||||| | ||||| ||||||||| ||||| |
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| T |
10335857 |
agtattggcttgaacaacagcactggaaaattctccatagcaatggctttgtagattaatcgatctcccgagagggtc-ttcgtcgaataaagcaaagtt |
10335759 |
T |
|
| Q |
210 |
gtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgag-aaaagagagtgat |
308 |
Q |
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||||||| || |||||||| ||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| || |||| |||||||| |
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| T |
10335758 |
gtcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtgattggaaaagaaaaatagagtgat |
10335659 |
T |
|
| Q |
309 |
tttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaatgaatattctat |
383 |
Q |
| |
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|||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
10335658 |
cttgattgtgaatg--------atgatttaaagtatgaaaaattgtgaatgtgattgaaggaatgaatattctat |
10335592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 10318713 - 10318347
Alignment:
| Q |
11 |
agatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatatc |
110 |
Q |
| |
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| T |
10318713 |
agatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagactgcattgttagaggcaacttcaatttggctttgatcttccatagt |
10318614 |
T |
|
| Q |
111 |
ttcatttgcttgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagggccattcgt-gaataaagctaagtt |
209 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| | ||||| ||||||||| ||||| |
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| T |
10318613 |
agtattggcttgaacaacagcactggaaaattctccatagcaatggctttggagattaatcgatctcccgagagggtc-ttcgtcgaataaagcaaagtt |
10318515 |
T |
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| Q |
210 |
gtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgag-aaaagagagtgat |
308 |
Q |
| |
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||||||| || |||||||| ||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| || |||| |||||||| |
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| T |
10318514 |
gtcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtgattggaaaagaaaaatagagtgat |
10318415 |
T |
|
| Q |
309 |
tttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaatgaatattctatgta |
386 |
Q |
| |
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|||||||||| || ||||||| ||||||| |||||||||||||||||| | |||||||||||||||||| |
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|
| T |
10318414 |
cttgattgtgaatg--------atgatttaaagtatgaaaaattgtgaatgtgatt--aggaatgaatattctatgta |
10318347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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