View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15324_high_11 (Length: 480)
Name: NF15324_high_11
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 34)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 39138357 - 39138820
Alignment:
| Q |
1 |
caaaaatcctattgtcatcttaatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39138357 |
caaaaatcctattgtcatcttcatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatga |
39138456 |
T |
|
| Q |
101 |
tcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39138457 |
tcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaa |
39138556 |
T |
|
| Q |
201 |
gttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattgatgatggctgcatctttctgctagaacaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39138557 |
gttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattattgatgatggctgcatctttctgctagaacaac |
39138656 |
T |
|
| Q |
301 |
tgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaaaatactgaaaattctct |
400 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39138657 |
tgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaaaatactgaaaattctct |
39138756 |
T |
|
| Q |
401 |
ggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39138757 |
ggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagat |
39138820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 44 - 464
Target Start/End: Original strand, 39152813 - 39153236
Alignment:
| Q |
44 |
tatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctc |
143 |
Q |
| |
|
|||||| || ||||| | |||| |||| |||||||||| | ||||| ||| ||||||| || | || || || ||||||||||||||||||||||||||| |
|
|
| T |
39152813 |
tatgagagagcttaaatatctgatatctaaatatgcagctacatcttacatggatgatgaaattagccctactattgatggaacaagtttgcagttgctc |
39152912 |
T |
|
| Q |
144 |
ccaagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgta |
243 |
Q |
| |
|
||||||||| ||| | |||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| || |
|
|
| T |
39152913 |
ccaagtgataaaagcgacattctagataacctgcaagaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtata |
39153012 |
T |
|
| Q |
244 |
agaacggagaacatgctgtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaaga |
343 |
Q |
| |
|
|||||||||| |||||||| ||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
39153013 |
agaacggagaccatgctgtgattatagatggtagctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaaga |
39153112 |
T |
|
| Q |
344 |
agcattgaagctagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaa |
440 |
Q |
| |
|
||||||||| || |||| | || |||||||||| || | ||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||| | |
|
|
| T |
39153113 |
agcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatgga |
39153212 |
T |
|
| Q |
441 |
ttgcttacttatttcgatgaagat |
464 |
Q |
| |
|
||| |||||| ||||||| ||||| |
|
|
| T |
39153213 |
ttggttacttctttcgataaagat |
39153236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 44 - 464
Target Start/End: Complemental strand, 39473198 - 39472769
Alignment:
| Q |
44 |
tatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctc |
143 |
Q |
| |
|
||||||||| ||||| | ||||||||| |||||||||| | ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
39473198 |
tatgagggagcttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatgaaacaagtttgcagttgctc |
39473099 |
T |
|
| Q |
144 |
ccaagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgta |
243 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| |
|
|
| T |
39473098 |
ccaagtgatgaaactgacattctagttgatctgcaagaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgta |
39472999 |
T |
|
| Q |
244 |
agaacggagaacatgctgtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcacc------gaagattaaacatgatgtaag |
337 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| | || |||||||||| | ||||| ||||| | ||||||||| |||||||| | | ||||| |
|
|
| T |
39472998 |
agaagggagaccatgctgtgattattgatggtagcaacatctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaa |
39472899 |
T |
|
| Q |
338 |
agaagaagcattgaagctagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtt |
434 |
Q |
| |
|
| |||| ||||||||||| |||||| || |||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||||| |||||||| || |
|
|
| T |
39472898 |
aaaagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatt |
39472799 |
T |
|
| Q |
435 |
tatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |
|
|
| T |
39472798 |
tatgaattgcttacttcttttgatgaagat |
39472769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 67 - 462
Target Start/End: Complemental strand, 44895512 - 44895114
Alignment:
| Q |
67 |
tatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattct |
166 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||| ||| || ||||| |
|
|
| T |
44895512 |
tatctaaatatgcagttacatctaacatggatgatcaattaagccgtaccattggtggaacaagtttgcaattgctcccaagtgagcaaaatgaaattct |
44895413 |
T |
|
| Q |
167 |
agttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcatt |
266 |
Q |
| |
|
||||| ||||| |||||||||| |||| |||||| |||||||||||||||||||||| || | ||| |||| | ||||||| | || ||| | | || |
|
|
| T |
44895412 |
agttactctgcgagaatcatcaaatcctgcaaaacttgttttggatataatacagaaccctagtatgccactgagtaagaaggatgacaatgatttggtt |
44895313 |
T |
|
| Q |
267 |
attgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatc |
366 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||||| |||| ||||| | ||||||| | |||||||||| |||||||||||||||||| ||| |
|
|
| T |
44895312 |
attgatgattggcgcatctatctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaat |
44895213 |
T |
|
| Q |
367 |
tgaaagctaacatgaa---aaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaag |
462 |
Q |
| |
|
| ||||||||||| || |||||||||||||||| |||||||||| |||||||||||| |||||||| |||||| |||| |||||| ||||||||||| |
|
|
| T |
44895212 |
tcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaag |
44895114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 72 - 464
Target Start/End: Original strand, 39604098 - 39604493
Alignment:
| Q |
72 |
aaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattctagtta |
171 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||||| || ||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| || |
|
|
| T |
39604098 |
aaatatgcagttacatgttacacagatgatcaatcaactcctaccattgatggaagaagtttgcagttgctcccaagtgacgaaactgaaattctagata |
39604197 |
T |
|
| Q |
172 |
atctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattga |
271 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||| | || ||||| ||||| ||||||| |||||||| |
|
|
| T |
39604198 |
atctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattga |
39604297 |
T |
|
| Q |
272 |
tgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaa |
371 |
Q |
| |
|
|||| | ||| ||||||| |||||||||| |||||| ||| | ||||||| | |||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
39604298 |
tgatagagacattcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaa |
39604397 |
T |
|
| Q |
372 |
gctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
||||||| | ||||||| ||||||| ||| ||||| ||||||||||| || ||||| |||||| |||| | ||| ||||||||||||| |
|
|
| T |
39604398 |
tctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggctccttctttcgatgaagat |
39604493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 190 - 464
Target Start/End: Complemental strand, 39380776 - 39380499
Alignment:
| Q |
190 |
atccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattgatgatggctgcatctttct |
289 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || || |||| ||||| ||| ||||| ||||| ||||||| ||| || ||||| || |||||||||| |
|
|
| T |
39380776 |
atccagcaaaagttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttct |
39380677 |
T |
|
| Q |
290 |
gctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatga---aaaat |
386 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||| || || |||||||||||||||| ||| |||||||||| || |||||||| |||| | | ||| |
|
|
| T |
39380676 |
gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaat |
39380577 |
T |
|
| Q |
387 |
actgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|||||| ||||| ||| |||||| || ||||||||| |||||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
39380576 |
actgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaagat |
39380499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 145 - 464
Target Start/End: Original strand, 44624634 - 44624959
Alignment:
| Q |
145 |
caagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaa |
244 |
Q |
| |
|
||||||| |||| || |||||| | |||| ||| |||||||||||||||||||||| |||||||||||||||||| ||| || ||||| |||| ||| |
|
|
| T |
44624634 |
caagtgaggaaattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccccattatcccacttcctaa |
44624733 |
T |
|
| Q |
245 |
gaacggagaacatgctgtcattattgatgatg---gctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaa |
341 |
Q |
| |
|
||| ||||| | ||||| ||||||||||||| || |||||| |||||||||| ||||||| | ||||||||| || ||||||| | ||||||||| |
|
|
| T |
44624734 |
gaaaggagacaaagctgtgattattgatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagat |
44624833 |
T |
|
| Q |
342 |
gaagcattgaagctagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatg |
438 |
Q |
| |
|
||||||||||||||||| | | | ||||||||||||||| ||||||||||||||| | ||| ||||||||| |||||| |||||||||| |||||| |
|
|
| T |
44624834 |
gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgatttatg |
44624933 |
T |
|
| Q |
439 |
aattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
||||| ||||||||| ||||||||| |
|
|
| T |
44624934 |
gattgcatacttattttgatgaagat |
44624959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 72 - 464
Target Start/End: Original strand, 39099369 - 39099764
Alignment:
| Q |
72 |
aaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattctagtta |
171 |
Q |
| |
|
|||||||||||| | | | |||| |||||||||| || ||| ||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||| || |
|
|
| T |
39099369 |
aaatatgcagttacttgttacacagatgatcaatcaactcctaccattgatggaagaagtttgaagttgctcccaagtgacgaaactgaaattctagata |
39099468 |
T |
|
| Q |
172 |
atctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattga |
271 |
Q |
| |
|
||||||||| || |||||||||| ||||||| |||||||||||||||||||| || ||||||| | || ||||| ||||| ||||||| |||||||| |
|
|
| T |
39099469 |
atctgcaaggattatcagatccatcaaaagtcgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattga |
39099568 |
T |
|
| Q |
272 |
tgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaa |
371 |
Q |
| |
|
||| | ||| ||||||| ||||||||||| ||||||||||| | || |||| | ||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
39099569 |
tgaaagagacattcttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaa |
39099668 |
T |
|
| Q |
372 |
gctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|| || | ||| |||||||||||| ||| |||||| ||||||||||| || ||||| ||||| ||||| | ||| ||| ||||||||| |
|
|
| T |
39099669 |
tcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagat |
39099764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 172 - 464
Target Start/End: Complemental strand, 39396952 - 39396657
Alignment:
| Q |
172 |
atctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattga |
271 |
Q |
| |
|
|||||| |||||||||||||||| ||| | ||||||||||||||||||| || || |||||||||| ||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
39396952 |
atctgctagaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattga |
39396853 |
T |
|
| Q |
272 |
tgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaa |
371 |
Q |
| |
|
||| || ||||| |||||||| ||||||| ||||||||||| | |||| || | |||||||||||||||| |||||||||||| | || ||| | |
|
|
| T |
39396852 |
ggatagccacatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgaga |
39396753 |
T |
|
| Q |
372 |
gctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
||| |||| | ||||||||||||||||| ||| |||||| |||||| | || |||||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
39396752 |
gcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagat |
39396657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 166 - 464
Target Start/End: Complemental strand, 39196816 - 39196515
Alignment:
| Q |
166 |
tagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||| || |||| ||| || || ||||||| ||| | || ||||| ||||||| | |
|
|
| T |
39196816 |
tagttaatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacagtgggaaaagggagataatgctgtggt |
39196717 |
T |
|
| Q |
266 |
tattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaat |
365 |
Q |
| |
|
||||| |||| | |||| |||||| ||||||||||| ||||||||||| | ||||||| | ||| ||| |||||||||||||||||||| || || |
|
|
| T |
39196716 |
tattgttgattaccaaatctatctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgat |
39196617 |
T |
|
| Q |
366 |
ctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaag |
462 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| |||||| || ||||| ||| |||||||| ||||| |||||||| || ||| ||||||| |
|
|
| T |
39196616 |
ttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaag |
39196517 |
T |
|
| Q |
463 |
at |
464 |
Q |
| |
|
|| |
|
|
| T |
39196516 |
at |
39196515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 464
Target Start/End: Original strand, 39216537 - 39216834
Alignment:
| Q |
170 |
taatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattatt |
269 |
Q |
| |
|
|||| ||| ||| |||||||||||| ||| | ||||||||||||| |||||||| || | ||||| | ||||||||| ||||| ||||||| |||||| |
|
|
| T |
39216537 |
taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattatt |
39216636 |
T |
|
| Q |
270 |
gatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctga |
369 |
Q |
| |
|
| |||| | || | | ||||||||||||||| | ||||||||| | ||||||| | |||||||||||||||||||||||||||| || || ||| |
|
|
| T |
39216637 |
gctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttga |
39216736 |
T |
|
| Q |
370 |
aagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|| ||||||||| |||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||| |||| |||||| ||| | ||||||| |
|
|
| T |
39216737 |
aatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagat |
39216834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 464
Target Start/End: Original strand, 39370993 - 39371294
Alignment:
| Q |
166 |
tagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcat |
265 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| | ||||||||||||| |||||||| | ||| |||||| | ||||||| ||||| ||| ||| || |
|
|
| T |
39370993 |
tagttgatctgctagaatcatcagatccatcaagatttgttttggatatgatacagaataccattgttccactgagtaagaagggagacaatgttgtaat |
39371092 |
T |
|
| Q |
266 |
tattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaat |
365 |
Q |
| |
|
||||| |||| | ||| | |||||||||||||| || | ||||||||| || ||| | | | ||||||||| ||||||||||||||||||||| || |
|
|
| T |
39371093 |
tattgctgattaccaaatcctgctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgat |
39371192 |
T |
|
| Q |
366 |
ctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaag |
462 |
Q |
| |
|
||||||| ||||||| |||||| | ||||| || |||||||||| ||||||||| || |||||||| ||||| |||| |||||| ||| ||||||| |
|
|
| T |
39371193 |
atgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaag |
39371292 |
T |
|
| Q |
463 |
at |
464 |
Q |
| |
|
|| |
|
|
| T |
39371293 |
at |
39371294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 464
Target Start/End: Complemental strand, 39421494 - 39421191
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||| | | ||||||||||||||||||||| || ||||||| | || |||||| ||||| ||| | |
|
|
| T |
39421494 |
cattcaagtcaatctgcaaggattttcagatccagcacatgctgttttggatataatacagaaccccattattcaaaagtataagaagggagacaatgat |
39421395 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcac |
360 |
Q |
| |
|
| |||||||| || | |||||||||||||||||||||||| | ||||||||| | |||||| | ||||| |||||||||||||||||| || | |
|
|
| T |
39421394 |
gcgattattgaagagaaccacatctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctc |
39421295 |
T |
|
| Q |
361 |
ttaatctgaaagctaacatg---aaaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcga |
457 |
Q |
| |
|
|| || |||||||||| ||| |||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||| ||||||||||| | |
|
|
| T |
39421294 |
ttgatttgaaagctaatatggaagaaaatactgaaaataat---ttggttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaa |
39421198 |
T |
|
| Q |
458 |
tgaagat |
464 |
Q |
| |
|
||||||| |
|
|
| T |
39421197 |
tgaagat |
39421191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 379
Target Start/End: Complemental strand, 39493739 - 39493532
Alignment:
| Q |
172 |
atctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattga |
271 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| | |||||||| ||||| |||||| |||||||| |
|
|
| T |
39493739 |
atctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattga |
39493640 |
T |
|
| Q |
272 |
tgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaa |
371 |
Q |
| |
|
|||| || ||| ||||||| ||| |||||| | ||||||||| | |||| || | |||||| |||||||||| |||||||||||||| || ||||| |
|
|
| T |
39493639 |
tgatagccacattcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaa |
39493540 |
T |
|
| Q |
372 |
gctaacat |
379 |
Q |
| |
|
|||||||| |
|
|
| T |
39493539 |
gctaacat |
39493532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 161 - 421
Target Start/End: Complemental strand, 39189065 - 39188802
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
||||| ||| ||| |||||| || ||||||||| |||||||||||||||||||||||||||| || ||||||| | |||| ||| ||||| ||| | |
|
|
| T |
39189065 |
cattcaagtcaatttgcaaggattatcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgtt |
39188966 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcac |
360 |
Q |
| |
|
|| |||||||||||| || ||| ||||||| | |||||| ||||||||||| | ||||||| | |||||||||| || ||| |||| ||||||| |
|
|
| T |
39188965 |
gtaattattgatgatagccacattcttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcac |
39188866 |
T |
|
| Q |
361 |
ttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctact |
421 |
Q |
| |
|
|| || | ||||||||||||| |||||| || ||||||| |||||||||| ||||||||||| |
|
|
| T |
39188865 |
ttgatttaaaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctact |
39188802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 166 - 446
Target Start/End: Complemental strand, 39206048 - 39205765
Alignment:
| Q |
166 |
tagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcat |
265 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||||| || |||| ||| || || | ||||| ||| | || ||||| ||| ||| || |
|
|
| T |
39206048 |
tagttaatctgcaagaatcagcagatccatcaaaacttgttttggaaatgatactgaaccccatcactccactgtgccaaaagggagataatgttgtgat |
39205949 |
T |
|
| Q |
266 |
tattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaat |
365 |
Q |
| |
|
||||| |||| | || | |||||| ||||||||||| ||||||||||| ||| ||| | ||| |||||| ||||||||||||||||| || | |
|
|
| T |
39205948 |
tattgctgattaccaaatatatctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgac |
39205849 |
T |
|
| Q |
366 |
ctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgctt |
446 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| ||| |||||| |||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
39205848 |
ttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgctt |
39205765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 161 - 464
Target Start/End: Original strand, 44615277 - 44615586
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||| || || | ||||||| | |||||| ||||| | || |
|
|
| T |
44615277 |
cattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaagaaaggagacaaagcg |
44615376 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaa---gattaaacatgatgtaagagaagaagcattgaagctag |
357 |
Q |
| |
|
|| ||||||||||| ||||| |||| |||||||||||||||||| | ||||||||| || |||||| | ||||||||| ||||| |||||||||| |
|
|
| T |
44615377 |
gtgattattgatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctag |
44615476 |
T |
|
| Q |
358 |
cacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattt |
454 |
Q |
| |
|
| | | ||||||||||||||| ||||||| ||||||||| ||| || ||| || |||||| ||||||| || |||| | |||| ||| ||| || |
|
|
| T |
44615477 |
cgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactt |
44615576 |
T |
|
| Q |
455 |
cgatgaagat |
464 |
Q |
| |
|
||||||||| |
|
|
| T |
44615577 |
tgatgaagat |
44615586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 161 - 373
Target Start/End: Original strand, 39144467 - 39144679
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| | |||||||| ||||| ||||| |
|
|
| T |
39144467 |
cattcttggtaatcttcaaggatcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgct |
39144566 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcac |
360 |
Q |
| |
|
|| |||||||||||| || ||| ||||||| | |||||| | |||||||| | ||||||| | |||||| |||||||||| |||||||||||| |
|
|
| T |
39144567 |
gtaattattgatgatagccacattcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcac |
39144666 |
T |
|
| Q |
361 |
ttaatctgaaagc |
373 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
39144667 |
ttgatttgaaagc |
39144679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 379
Target Start/End: Original strand, 2362574 - 2362768
Alignment:
| Q |
182 |
atcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattgatgatggctgc |
281 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||| ||||| || || ||||||| ||||||| |||||| ||| ||| |||||||||||| | | |
|
|
| T |
2362574 |
atcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaag---ggagaaaatgttgtaattattgatgatcaccac |
2362670 |
T |
|
| Q |
282 |
atctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacat |
379 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||| | |||||| | |||| ||||||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
2362671 |
attgatctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacat |
2362768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 39380939 - 39380832
Alignment:
| Q |
33 |
gcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtt |
132 |
Q |
| |
|
||||||| |||||||||||| ||||| | ||||||||| |||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
39380939 |
gcttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatgatcgattaagtcataccattgggggaacaagtt |
39380840 |
T |
|
| Q |
133 |
tgcagttg |
140 |
Q |
| |
|
|||||||| |
|
|
| T |
39380839 |
tgcagttg |
39380832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 379
Target Start/End: Complemental strand, 39425844 - 39425626
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| |||||||||||||||| ||||||||||| || |||||| | |||||||| ||||| ||||| |
|
|
| T |
39425844 |
cattctaggtaatctgcaaggcttttcagatccatcaaaagttgttttggaaataatacagaaccctattattaaaaagtgtaagatgggagatgatgct |
39425745 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcac |
360 |
Q |
| |
|
|| |||||||| ||| || ||| |||||| | |||| | |||||||||||| | |||| || |||||||| |||||||||| ||||| |||||| |
|
|
| T |
39425744 |
gttattattgaggatagccacattcatctgctcaatgaacttaggagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcac |
39425645 |
T |
|
| Q |
361 |
ttaatctgaaagctaacat |
379 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
39425644 |
ttgatttgaaagctaacat |
39425626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 446
Target Start/End: Original strand, 39223590 - 39223870
Alignment:
| Q |
166 |
tagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||| || |||| ||| || || |||||||||||| | || ||||| | ||| || |
|
|
| T |
39223590 |
tagttaatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacggtgtcaaaagggagacaa---tgtgat |
39223686 |
T |
|
| Q |
266 |
tattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaat |
365 |
Q |
| |
|
|||| |||| | ||| ||| || ||||||||||| ||||||||||| | ||| ||| | || |||||| ||||||||||||||||| | || |
|
|
| T |
39223687 |
tattactgattaccaaatccatctacttgaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgat |
39223786 |
T |
|
| Q |
366 |
ctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgctt |
446 |
Q |
| |
|
| |||| ||||||||| ||||||||||| ||| ||| |||||| |||||||| ||| |||||||| ||||| |||||||| |
|
|
| T |
39223787 |
ttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgctt |
39223870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 39387677 - 39387525
Alignment:
| Q |
289 |
tgctagaacaactgattagaatctcaccgaagatt-aaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---a |
384 |
Q |
| |
|
|||||||||||||||| |||| |||||| || ||| |||| || ||||| | ||||||||||||||||||| | | || | ||||||||||||||| | |
|
|
| T |
39387677 |
tgctagaacaactgatgagaacctcaccaaaaattgaaacttg-tgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaa |
39387579 |
T |
|
| Q |
385 |
atactgaaaattctctggtggttctcggttttctactgattttgtcagtttatg |
438 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| ||| |||||||| |||||| |
|
|
| T |
39387578 |
atactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg |
39387525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 39397087 - 39397008
Alignment:
| Q |
61 |
ctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttg |
140 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||| |||||| | ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39397087 |
ctctgctatctaaacatgcagttgcatcctacatggatgaccgattaagtcctaccattgatggaacaagtttgcagttg |
39397008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 39387928 - 39387850
Alignment:
| Q |
62 |
tctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttg |
140 |
Q |
| |
|
|||||| || ||||||||||||| |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
39387928 |
tctgctttctaaatatgcagttgaatcttacatggatgatcaattaagtcgtaccattggtggaacaagtttgcagttg |
39387850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 464
Target Start/End: Complemental strand, 39413161 - 39413034
Alignment:
| Q |
340 |
aagaagcattgaagctagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagttta |
436 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||| ||||||| ||||| ||| ||| |||||| ||||||| || |||||||||||| |
|
|
| T |
39413161 |
aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttg |
39413062 |
T |
|
| Q |
437 |
tgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|| |||| |||||| ||| ||||||||| |
|
|
| T |
39413061 |
tggattggttacttttttggatgaagat |
39413034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 39370835 - 39370944
Alignment:
| Q |
32 |
tgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagt |
131 |
Q |
| |
|
|||||||| |||| ||||| | ||||||| ||| |||| |||||||||||||| ||| | | ||||||||||||||||| | | ||| |||||||||| |
|
|
| T |
39370835 |
tgcttctataaatgtgaggcagcttaattatctattatctaaatatgcagttgcgtcttatatggatgatcaattaagtcgtaactttggtggaacaagt |
39370934 |
T |
|
| Q |
132 |
ttgcagttgc |
141 |
Q |
| |
|
|||||||||| |
|
|
| T |
39370935 |
ttgcagttgc |
39370944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 462
Target Start/End: Complemental strand, 39478420 - 39478301
Alignment:
| Q |
346 |
cattgaagctagcacttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaatt |
442 |
Q |
| |
|
||||||||||||||| | || |||||||| |||| | ||||||||||||||||| || ||||| | |||||||||| |||||||| |||||| ||| |
|
|
| T |
39478420 |
cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt |
39478321 |
T |
|
| Q |
443 |
gcttacttatttcgatgaag |
462 |
Q |
| |
|
|||||||| |||||| |||| |
|
|
| T |
39478320 |
gcttacttctttcgaagaag |
39478301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 39126482 - 39126575
Alignment:
| Q |
286 |
ttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacat |
379 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || ||| ||| | |||||||||||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
39126482 |
ttctgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacat |
39126575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 2362440 - 2362521
Alignment:
| Q |
75 |
tatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaa |
156 |
Q |
| |
|
|||||| || ||||| ||| ||||||||| |||||| ||||||||||||| |||||||||||| ||||||| ||| |||| |
|
|
| T |
2362440 |
tatgcaatttcatctttcacagatgatcaaccaagtcctaccattgatggaagaagtttgcagtttctcccaattgaggaaa |
2362521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 39421605 - 39421533
Alignment:
| Q |
74 |
atatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctccca |
146 |
Q |
| |
|
|||||||| | ||| | ||| ||||||| |||| ||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
39421605 |
atatgcagatacatgttacatggatgatgaatttagtcctgccattgttggaacaagtttgcagttgctccca |
39421533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 39223466 - 39223540
Alignment:
| Q |
66 |
ctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttg |
140 |
Q |
| |
|
||||| |||||||||||||||||| ||| | ||||||||| ||||| || ||| ||||| ||||||||||||| |
|
|
| T |
39223466 |
ctatctaaatatgcagttgcatcttacatgtatgatcaatcaagtcatgcctttggtggaataagtttgcagttg |
39223540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 39189188 - 39189091
Alignment:
| Q |
62 |
tctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactg |
159 |
Q |
| |
|
||||||| | || ||||||||| |||| |||| | | ||||||||||||| ||| |||||| || ||||||| |||||||||| ||||| |||||| |
|
|
| T |
39189188 |
tctgctagctaattatgcagttacatcgtacacaggtaatcaattaagtcccaccgttgatgaaagaagtttgatgttgctcccatgtgatcaaactg |
39189091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 39196973 - 39196866
Alignment:
| Q |
32 |
tgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagt |
131 |
Q |
| |
|
|||||||| ||||||| | || ||||| | ||||||||| ||||||||||||| |||| ||| ||| ||||||| ||| | || ||| ||||| |||| |
|
|
| T |
39196973 |
tgcttctataaatatg-gagagcttaaatatctgctatctaaatatgcagttgaatcttacatggacgatcaatcaagccgtgcctttggtggaagaagt |
39196875 |
T |
|
| Q |
132 |
ttgcagttg |
140 |
Q |
| |
|
||||||||| |
|
|
| T |
39196874 |
ttgcagttg |
39196866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 179 - 464
Target Start/End: Original strand, 19808795 - 19809077
Alignment:
| Q |
179 |
agaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattgatgatggc |
278 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||| | ||||| |||||||| |||||||| | || |
|
|
| T |
19808795 |
agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccacgatgtaacgagggagaccatgctgt---tattgatggtagc |
19808891 |
T |
|
| Q |
279 |
tgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaaca |
378 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
19808892 |
agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca |
19808991 |
T |
|
| Q |
379 |
tgaaaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19808992 |
tgaaaagtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagat |
19809077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19808206 - 19808388
Alignment:
| Q |
1 |
caaaaatcctattgtcatcttaatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatga |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19808206 |
caaaaatccatttgtcatcttcatttgctgttgtttctaaaaatatgagggatcttaatcctctgctatccaaatatgcagttgcatctagcacggatga |
19808305 |
T |
|
| Q |
101 |
tcaattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatgaaactgtcattctagttaatctgcaagaatc |
184 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
19808306 |
tcgattaagtccaaccattgatggaacaagtttgcagttgctcccaagtgatg-aactgagattctagtcaatctgcaagaatc |
19808388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 145 - 464
Target Start/End: Original strand, 17060501 - 17060823
Alignment:
| Q |
145 |
caagtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaa |
244 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| ||| || |||||||||| ||| |
|
|
| T |
17060501 |
caagtgaggaatctgacattctagttaatttgcaagaatcatcggatccatcaaaaattgttttggatgtaataatgaaccccattattccactacctaa |
17060600 |
T |
|
| Q |
245 |
gaacggagaacatgctgtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaa |
344 |
Q |
| |
|
||| ||||| | | ||| ||||||||||| || |||||||| |||||||||||||||| | ||| ||||| || |||||| | ||||| ||| ||| |
|
|
| T |
17060601 |
gaagggagacaaagttgtgattattgatgaaagccgcatctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaa |
17060700 |
T |
|
| Q |
345 |
gcattgaagctagcacttaatctgaaagctaacatgaa---aaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaat |
441 |
Q |
| |
|
|| ||||||||||||| | | ||||||||||||| || |||||||||| |||| ||| ||||||||| ||||| |||| ||||| ||||||| || |
|
|
| T |
17060701 |
gctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatggat |
17060800 |
T |
|
| Q |
442 |
tgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|| |||||||||| ||| ||||| |
|
|
| T |
17060801 |
tgtttacttattttgatcaagat |
17060823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 464
Target Start/End: Original strand, 33562169 - 33562466
Alignment:
| Q |
170 |
taatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattatt |
269 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| || |||| ||| || || |||||| |||| | || ||||| ||| |||||||||| |
|
|
| T |
33562169 |
taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatctttccactgtgtcaaaagggagacaatgttgtcattatt |
33562268 |
T |
|
| Q |
270 |
gatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctga |
369 |
Q |
| |
|
| |||| | |||| ||| || ||||||||||| ||||||||||| | ||| ||| | ||| ||| |||||||||||||||||||| || || ||| |
|
|
| T |
33562269 |
gttgattaccaaatctatcttctggaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttga |
33562368 |
T |
|
| Q |
370 |
aagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|||||||||||| ||||||||||| || | ||| |||||| |||||||| || |||||||| ||||| |||||||| || ||| ||||||||| |
|
|
| T |
33562369 |
aagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagat |
33562466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 458
Target Start/End: Original strand, 16114249 - 16114538
Alignment:
| Q |
172 |
atctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgctgtcattattga |
271 |
Q |
| |
|
|||||||||||||| |||||||| ||| | |||||||||||||||||||||| || || ||||| ||||||||| ||||| ||||||| |||||||| |
|
|
| T |
16114249 |
atctgcaagaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattga |
16114348 |
T |
|
| Q |
272 |
tgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaa |
371 |
Q |
| |
|
||| || ||||| |||| ||||| ||||||| ||||| ||||| | ||||||| | |||||||||| |||||||||||||||| | || ||||| |
|
|
| T |
16114349 |
tgaatgccacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaa |
16114448 |
T |
|
| Q |
372 |
gctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgat |
458 |
Q |
| |
|
||| |||||| | |||||| ||||||| || ||| | |||||| | ||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
16114449 |
gcttacatgagagagaatactaaaaattcatcggctgttgttggttttatgctgcttttgtcagtttatggattgctaacttatttcgat |
16114538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 16114126 - 16114193
Alignment:
| Q |
73 |
aatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagtttgcagttg |
140 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| ||||||| || |||| | ||||||||||||||||| |
|
|
| T |
16114126 |
aatatgcagttgcatcttacatggatgatcagttaagtcatacaattggtagaacaagtttgcagttg |
16114193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 464
Target Start/End: Original strand, 45342956 - 45343142
Alignment:
| Q |
281 |
catctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatg |
380 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||| || | ||||||| | |||||||||||||||||| |||||||||||| | ||||||||||| || |
|
|
| T |
45342956 |
catctatctcctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtg |
45343055 |
T |
|
| Q |
381 |
aa---aaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
|| |||||||||||| || || ||||| ||||||||||||||||||||| || ||| ||||||||||| ||| ||| ||||| |
|
|
| T |
45343056 |
aaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagat |
45343142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 464
Target Start/End: Original strand, 44730157 - 44730292
Alignment:
| Q |
332 |
tgtaagagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttg |
428 |
Q |
| |
|
||||||||| ||||| ||||||||||||| | | ||||||||||||| ||| ||||||||||||||| || ||||||||| |||||| |||||||| |
|
|
| T |
44730157 |
tgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttg |
44730256 |
T |
|
| Q |
429 |
tcagtttatgaattgcttacttatttcgatgaagat |
464 |
Q |
| |
|
| ||||| |||||||||||| || |||| |||| |
|
|
| T |
44730257 |
acgatttatagattgcttacttactttgatggagat |
44730292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 45342745 - 45342837
Alignment:
| Q |
41 |
aaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaacaagttt |
133 |
Q |
| |
|
||||||||| || ||||| | ||||||||| ||||| ||| ||||| ||| |||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
45342745 |
aaatatgagagagcttaaatatctgctatctaaatacttagtcacatcttacatggatgatcaattaagtactaccattgatggaacaggttt |
45342837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 464
Target Start/End: Original strand, 51575859 - 51576162
Alignment:
| Q |
161 |
cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaacggagaacatgct |
260 |
Q |
| |
|
||||||||| ||||| | || ||| ||||||||| |||||| |||| |||||||||||||||| | || ||||||| |||||| ||||| ||| | |
|
|
| T |
51575859 |
cattctagtcaatcttctagcatcctcagatccatcaaaagatgttctggatataatacagaaccacatcattccacattgtaag---ggagacaatgtt |
51575955 |
T |
|
| Q |
261 |
gtcattattgatgatggctgcatctttctgctagaacaactgattagaatctcaccgaagattaaacatgatgtaagagaagaagcattgaagctagcac |
360 |
Q |
| |
|
|| | |||| ||| | || | | ||||||| |||||||| || ||||||||||| | || |||| | ||||| ||||||||||||||| |||| | |
|
|
| T |
51575956 |
gtaactattaatggtagccacgttgttctgcttgaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaactagtcc |
51576055 |
T |
|
| Q |
361 |
ttaatctgaaagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttatttcga |
457 |
Q |
| |
|
| ||| ||||||| |||| | |||||||||||||||| |||||||||| |||| ||| || || ||||| |||||| |||| || ||||||| || |
|
|
| T |
51576056 |
tcaatttgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttga |
51576155 |
T |
|
| Q |
458 |
tgaagat |
464 |
Q |
| |
|
| ||||| |
|
|
| T |
51576156 |
taaagat |
51576162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 33151922 - 33151973
Alignment:
| Q |
96 |
gatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaa |
147 |
Q |
| |
|
||||||||| |||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
33151922 |
gatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa |
33151973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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