View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15324_high_20 (Length: 391)
Name: NF15324_high_20
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_20 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 42266165 - 42265806
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42266165 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
42266066 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266065 |
attacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
42265966 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42265965 |
agaagctatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatactgaacaatgattca |
42265867 |
T |
|
| Q |
316 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265866 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
42265806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 42270884 - 42270525
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42270884 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
42270785 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270784 |
attacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
42270685 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42270684 |
agaagctatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatactgaacaatgattca |
42270586 |
T |
|
| Q |
316 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270585 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
42270525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 24520080 - 24520363
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24520080 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
24520179 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24520180 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
24520279 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520280 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 48701876 - 48702159
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48701876 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
48701975 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48701976 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
48702075 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702076 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
48702159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 48697186 - 48697470
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaa-aaccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48697186 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
48697285 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacag |
214 |
Q |
| |
|
||||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48697286 |
aattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacag |
48697385 |
T |
|
| Q |
215 |
gagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697386 |
gagaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
48697470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30945532 - 30945775
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30945532 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaa |
30945630 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
30945631 |
attacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcaca |
30945730 |
T |
|
| Q |
214 |
ggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30945731 |
ggagaaactaatttttctctctatatttttcctctctctattcta |
30945775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30950238 - 30950481
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30950238 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
30950336 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
|||||| |||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
30950337 |
attacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcaca |
30950436 |
T |
|
| Q |
214 |
ggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30950437 |
ggagaaactaatttttctctctatatttttcctctctctattcta |
30950481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 10427542 - 10427315
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga- |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||| || |||||| |||||||||||||||||||| |
|
|
| T |
10427542 |
aagaggaactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagac |
10427443 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacag |
214 |
Q |
| |
|
|||||||| || | |||||||||||||| |||| ||| ||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
10427442 |
aattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacag |
10427353 |
T |
|
| Q |
215 |
gagaaactaatttttctctctatattttttctctcact |
252 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427352 |
gagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 48782925 - 48782850
Alignment:
| Q |
92 |
gagaactttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttat |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
48782925 |
gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
85 |
aagagtagagaactttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaataca |
184 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| |||| |||||||| |||| || ||| | | |||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacct--ctctaaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
185 |
aactaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 17248096 - 17248015
Alignment:
| Q |
30 |
acacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaa |
112 |
Q |
| |
|
|||||||||||| | |||||| ||| ||||||||||||||||||||||| | | ||||||| |||||||||| ||||||||| |
|
|
| T |
17248096 |
acacaatattta-catggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 9439427 - 9439786
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9439427 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
9439526 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9439527 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
9439626 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439627 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
9439725 |
T |
|
| Q |
316 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439726 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
9439786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 9444147 - 9444506
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9444147 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
9444246 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9444247 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
9444346 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444347 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
9444445 |
T |
|
| Q |
316 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444446 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
9444506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 27874045 - 27874404
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27874045 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
27874144 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874145 |
attacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
27874244 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27874245 |
agaagctatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatactgaacaatgattca |
27874343 |
T |
|
| Q |
316 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874344 |
cggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
27874404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 1234963 - 1234680
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1234963 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
1234864 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1234863 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
1234764 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234763 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 26976186 - 26976469
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26976186 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaa |
26976285 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26976286 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
26976385 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976386 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
26976469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 27878764 - 27879008
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27878764 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
27878863 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
27878864 |
attacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcaca |
27878963 |
T |
|
| Q |
214 |
ggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
27878964 |
ggagaaactaatttttctctctatatttttcctctctctattcta |
27879008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 30966914 - 30966683
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaa-aaaaccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||| | |||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30966914 |
aagaggaactgaacacacaatattta-cgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcactaagtggaaga |
30966816 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcac-a |
213 |
Q |
| |
|
|||| || |||| ||||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| ||| | | | |||||||||||||||| | |
|
|
| T |
30966815 |
aattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaaacctcacaa |
30966720 |
T |
|
| Q |
214 |
ggagaaactaatt-tttctctctatattttttctctc |
249 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966719 |
gtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 18968139 - 18967912
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga- |
114 |
Q |
| |
|
|||| ||| |||| ||| ||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
18968139 |
aagaggaactgaatacataatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagac |
18968040 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacag |
214 |
Q |
| |
|
|||||||| || | |||||||||||||| |||| ||| | | ||||||| | |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
18968039 |
aattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcat-gaaataggagaatactaac--------actaggagaaacctcacaa |
18967950 |
T |
|
| Q |
215 |
gagaaactaatttttctctctatattttttctctcact |
252 |
Q |
| |
|
||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967949 |
gagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 30986716 - 30986552
Alignment:
| Q |
70 |
aaaaaaccacggaacaagagtagagaactttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttat |
169 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| |||||||||| ||||||||||||| | |
|
|
| T |
30986716 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgt |
30986617 |
T |
|
| Q |
170 |
aaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta |
236 |
Q |
| |
|
|||||| ||||| ||| |||| | ||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
30986616 |
aaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta |
30986552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 21966784 - 21966677
Alignment:
| Q |
44 |
gtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaaattacaacacctttctctaaatacaaga |
143 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| | | || ||||||||||||||||||||||| |||||||||||| || |||| ||||||| | ||| |
|
|
| T |
21966784 |
gtggaaacccctcaataaataaagggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaag |
21966686 |
T |
|
| Q |
144 |
agagtacaa |
152 |
Q |
| |
|
||||||||| |
|
|
| T |
21966685 |
agagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23012557 - 23012665
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| ||| || |||||||||||| ||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
23012557 |
aagaagaattgaacacacattattta-cgtggaaactcgtcacaaattaaggggaaaaa-ccatggg-caagagtagagaactttcactaagtgagagaa |
23012653 |
T |
|
| Q |
116 |
attacaacacct |
127 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
23012654 |
atttcaagacct |
23012665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 34352510 - 34352192
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34352510 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
34352411 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34352410 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacagg |
34352311 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34352310 |
agaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgattggaaatgattca |
34352212 |
T |
|
| Q |
316 |
c-ggctagctatttatagga |
334 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
34352211 |
cgggcaagctatttatagga |
34352192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 34360218 - 34359900
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34360218 |
aagaggaactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
34360119 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34360118 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacagg |
34360019 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgctgaacaatgattca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34360018 |
agaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgattggaaatgattca |
34359920 |
T |
|
| Q |
316 |
c-ggctagctatttatagga |
334 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
34359919 |
cgggcaagctatttatagga |
34359900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 29585355 - 29585639
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29585355 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
29585454 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29585455 |
attacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatactaactaatacaaactaggagaaacctcacagg |
29585554 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29585555 |
agaaactaatttttctctctatatttttcctctcactactctagacaagctttacttgttgttgtgttgttactgatttgggatg |
29585639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 41718672 - 41718389
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41718672 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
41718573 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41718572 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
41718473 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718472 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
41718389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 41723398 - 41723115
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41723398 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
41723299 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41723298 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
41723199 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723198 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
41723115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 5823330 - 5823613
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5823330 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
5823429 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5823430 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
5823529 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823530 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 5818568 - 5818851
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5818568 |
aagaggaactgaacacacaatattttacgtggaaacccctcaactaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
5818667 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5818668 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
5818767 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818768 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
5818851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 54546145 - 54545767
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
|
|
| T |
54546145 |
aagaggaactgaacatacaatattta-cgtggaaacccctcaacaaataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaa |
54546047 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
54546046 |
attacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcaca |
54545947 |
T |
|
| Q |
214 |
ggagaaactaatttttctctctatattttttctctcactactcta-----aacaa---------gctttac-ttgttct-tg-tgttgttactgatttgg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| ||||| | |||| ||||||| || || |||||||||||||| |
|
|
| T |
54545946 |
ggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgttactgatttgg |
54545847 |
T |
|
| Q |
297 |
gatgctgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
376 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545846 |
gatgatgaacaatgattcacggctagctatttataggagcaaaatccattgcctcaacaacttgcatttaaggcaccatg |
54545767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 2817318 - 2817589
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| ||||||||| |||||||||| | |||||||| |||||| |||||||||||||||| |
|
|
| T |
2817318 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-aaaaaaccacagggcaagagtaaagaactctcactaagtggaagaa |
2817416 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcacca--ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
213 |
Q |
| |
|
||||||| | || |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
2817417 |
attacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatactaactaatacaaact--------------a |
2817502 |
T |
|
| Q |
214 |
ggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817503 |
ggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgatttgggatg |
2817589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 24659191 - 24659287
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| ||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
24659191 |
aagaggaactgaacacacaacattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 31204821 - 31204950
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaa-caagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| ||||| ||||||||||| ||||||||| |||||| ||||||| |||||||| |||||| ||| ||||||||||||||||||||||| | | |
|
|
| T |
31204821 |
aagaggaactgaactcacaatattta-cgtggaaacccctcaacaaataagaggaaaaaatcacggaggcaatagtagagaactttcactaagtgggaaa |
31204919 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagag |
147 |
Q |
| |
|
|||||||| ||| |||||||||| ||| |||| |
|
|
| T |
31204920 |
aattacaaaacc--tctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 24671245 - 24671301
Alignment:
| Q |
196 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
24671245 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 4579313 - 4579254
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaa |
75 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
4579313 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
| Q |
201 |
gagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
252 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
4579177 |
gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 35977161 - 35977106
Alignment:
| Q |
98 |
tttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaat |
153 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||| |||| ||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaat |
35977106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 5198710 - 5198993
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5198710 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaa |
5198809 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5198810 |
attacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacagg |
5198909 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
300 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198910 |
agaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg |
5198993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 15603139 - 15602905
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
15603139 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaa |
15603040 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
||||||| |||| ||||||||| || | || ||||||| |||| ||| |||| ||||||||||||||| ||||||||| |||| ||||||||||| || |
|
|
| T |
15603039 |
attacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatactaactaacacttactaagagaaacctcataga |
15602940 |
T |
|
| Q |
216 |
agaaactaatttttctctctatattttttctctca |
250 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602939 |
aaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 28716022 - 28715816
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaa |
115 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
28716022 |
aagaggaattgaacacacaatattta-cgtggaaacccctcattaaataaggggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaa |
28715925 |
T |
|
| Q |
116 |
attacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacagg |
215 |
Q |
| |
|
|||||| || | ||||||||| |||| |||||||||| ||||| | || ||||||||||||||| |||||||| | ||||||||||||| ||| | |
|
|
| T |
28715924 |
attacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat----actaacactacctaggagaaaccttacaag |
28715829 |
T |
|
| Q |
216 |
agaaactaatttt |
228 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
28715828 |
agaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 825741 - 825635
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaa-ccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
825741 |
aagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
825642 |
T |
|
| Q |
115 |
aattaca |
121 |
Q |
| |
|
||||||| |
|
|
| T |
825641 |
aattaca |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 830397 - 830291
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaa-ccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
830397 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaaga |
830298 |
T |
|
| Q |
115 |
aattaca |
121 |
Q |
| |
|
||||||| |
|
|
| T |
830297 |
aattaca |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
| Q |
174 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
830205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
| Q |
174 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta |
825549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 8004259 - 8004167
Alignment:
| Q |
90 |
tagagaactttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatac |
183 |
Q |
| |
|
|||| |||||||||| | |||||||||||| || |||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
8004259 |
tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta-cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 30396995 - 30397191
Alignment:
| Q |
47 |
gaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaacttt-cactaagtggaagaaattacaacacctttctctaaatacaagaag |
145 |
Q |
| |
|
||||| |||||| ||||||||| |||||| ||| | | ||||||||||||||| |||||||||||||||||||||| |||| | |||| ||||||| || |
|
|
| T |
30396995 |
gaaacccctcaacaaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggag |
30397094 |
T |
|
| Q |
146 |
agtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttc |
245 |
Q |
| |
|
|| ||| ||| |||| | || ||||||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| || | |
|
|
| T |
30397095 |
agacaaattacc-ctctatgttg-aaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcc |
30397184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
| Q |
88 |
agtagagaactttcactaagtggaagaaattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaat |
181 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||| ||| | | |||||||||||||| || ||| |||||||| | ||| |||||||||||| |
|
|
| T |
13843921 |
agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 16183686 - 16183913
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga- |
114 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16183686 |
aagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagac |
16183785 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacag |
214 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||| ||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16183786 |
aattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacag |
16183875 |
T |
|
| Q |
215 |
gagaaactaatttttctctctatattttttctctcact |
252 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183876 |
gagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 30235284 - 30235038
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaa-ccacggaacaagagtagagaactttcactaagtggaaga |
114 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||| | ||||||||| |||||||| ||| | ||||| |
|
|
| T |
30235284 |
aagaggaactgaacacacaatattta-cgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaaga |
30235186 |
T |
|
| Q |
115 |
aattacaacacctttctc-taaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaac--taacacaaactaggagaaacctca |
211 |
Q |
| |
|
||||||| |||| |||| || || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| | || ||||||||||| |
|
|
| T |
30235185 |
aattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacgtaagagaaacctca |
30235086 |
T |
|
| Q |
212 |
ca-ggagaaactaatttttctctctatattttttctctcactactcta |
258 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30235085 |
taaggagaaactaatttttctctctatatttttcctctcactactcta |
30235038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 8138542 - 8138645
Alignment:
| Q |
44 |
gtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaaattacaacacctttctctaaatacaaga |
143 |
Q |
| |
|
|||||||| ||| || ||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
8138542 |
gtggaaaccccttaacaaacaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaagg |
8138641 |
T |
|
| Q |
144 |
agag |
147 |
Q |
| |
|
|||| |
|
|
| T |
8138642 |
agag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 8140028 - 8140149
Alignment:
| Q |
25 |
tgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaaattacaaca |
124 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||| ||||||||||| ||||||| || |||| |||| |||||||||| |||||||||||||| || | |
|
|
| T |
8140028 |
tgaacgcacaatatttat-gtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataaga |
8140126 |
T |
|
| Q |
125 |
cctttctctaaatacaagaagag |
147 |
Q |
| |
|
||| ||||| |||||||| |||| |
|
|
| T |
8140127 |
cctctctcttaatacaaggagag |
8140149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 5102684 - 5102749
Alignment:
| Q |
53 |
cctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaaatta |
119 |
Q |
| |
|
|||||| |||||||||| |||||||| ||| |||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102684 |
cctcaacaaataagggg-aaaaaccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 46191479 - 46191266
Alignment:
| Q |
30 |
acacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga-aattacaacacctt |
128 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
46191479 |
acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttc |
46191380 |
T |
|
| Q |
129 |
tctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt |
228 |
Q |
| |
|
|||||||||| ||| |||| ||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
46191379 |
tctctaaatagaaggagagacaaattacc-ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatattt |
46191290 |
T |
|
| Q |
229 |
tctctctatattttttctctcact |
252 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
46191289 |
cctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 30697181 - 30697300
Alignment:
| Q |
27 |
aacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaagaaattacaacacc |
126 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30697181 |
aacacaaaatattta-cgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacc |
30697279 |
T |
|
| Q |
127 |
tttctctaaatacaagaagag |
147 |
Q |
| |
|
| | |||||||||||| |||| |
|
|
| T |
30697280 |
tctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 4130346 - 4130215
Alignment:
| Q |
16 |
aagaagaattgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga- |
114 |
Q |
| |
|
|||| ||| ||||||||||| ||||| |||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4130346 |
aagaggaactgaacacacaaaattta-cgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagat |
4130248 |
T |
|
| Q |
115 |
aattacaacacctttctctaaatacaagaagag |
147 |
Q |
| |
|
|||||||| || | |||||||||||||| |||| |
|
|
| T |
4130247 |
aattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 27290 - 27508
Alignment:
| Q |
25 |
tgaacacacaatatttaacgtggaaactcctcaataaataaggggaaaaaaccacggaacaagagtagagaactttcactaagtggaaga-aattacaac |
123 |
Q |
| |
|
||||||||||||| || |||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27290 |
tgaacacacaatactttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaat |
27389 |
T |
|
| Q |
124 |
acctttctctaaatacaagaagagtacaatcaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta |
223 |
Q |
| |
|
|| | |||||||||||||| |||| ||| |||| |||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
27390 |
acttctctctaaatacaaggagagacaaattacca-tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaacta |
27479 |
T |
|
| Q |
224 |
atttttctctctatattttttctctcact |
252 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
27480 |
tatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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