View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_23 (Length: 345)
Name: NF15324_high_23
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 21123292 - 21122966
Alignment:
| Q |
19 |
cttcctacacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatcagttctgctg |
118 |
Q |
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| T |
21123292 |
cttcctacacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatctgttctgctt |
21123193 |
T |
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| Q |
119 |
ctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21123192 |
ctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagc |
21123093 |
T |
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| Q |
219 |
taatgttgaattccactcagtattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgt |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21123092 |
taatgttgaattccactcattattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgt |
21122993 |
T |
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| Q |
319 |
ggtacaccatctaatgacacagagaat |
345 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21122992 |
ggtacaccatctaatgacacagagaat |
21122966 |
T |
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