View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_27 (Length: 314)
Name: NF15324_high_27
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 918724 - 919004
Alignment:
| Q |
23 |
gaatggagatagtatacatttttgaagaaagaatcatatttcatacaaaacattgttaatattcactgaatctttgcaaaattaaggtagaattagggta |
122 |
Q |
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| T |
918724 |
gaatggagatagtatacatgtttgaagaaagaatcatatttcatacaaaacattgttaatattcactgaatctttgcaaaattaaggtagaattagggta |
918823 |
T |
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| Q |
123 |
gtgataccctttatataaaatttgtttaatattgtaatttattttaaaatgtgacatggttgatgagggtgtatatactcaacaaaactacatgaatatt |
222 |
Q |
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| T |
918824 |
gtgataccctttatataaaatttgtttaatattgtaatttattttaaaatgtgacatggttgatgagggtg--tatactcaacaaaactacatgaatatt |
918921 |
T |
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| Q |
223 |
attgtgttcgctttatataaattaattggttcctgacattcatatattaagttccttaataaatgatctatatacagaataat |
305 |
Q |
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| T |
918922 |
attgtgttcgctttatataaattaattggttcctgacattcatatattaagttccttaataaatgatctatatacagaataat |
919004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 54541956 - 54542000
Alignment:
| Q |
128 |
accctttatataaaatttgtttaatattgtaatttattttaaaat |
172 |
Q |
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| T |
54541956 |
accctttaagtaaaatttgtttaatatttgaatttattttaaaat |
54542000 |
T |
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