View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_high_31 (Length: 305)

Name: NF15324_high_31
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_high_31
NF15324_high_31
[»] chr2 (1 HSPs)
chr2 (18-214)||(35413595-35413793)
[»] chr7 (4 HSPs)
chr7 (18-214)||(36718855-36719041)
chr7 (144-214)||(3868195-3868265)
chr7 (150-214)||(36718260-36718324)
chr7 (254-305)||(36719078-36719129)
[»] chr8 (3 HSPs)
chr8 (18-121)||(17636852-17636955)
chr8 (140-205)||(8790565-8790630)
chr8 (152-207)||(16939095-16939150)
[»] chr5 (4 HSPs)
chr5 (30-211)||(26303457-26303628)
chr5 (88-214)||(23074812-23074936)
chr5 (140-214)||(27179121-27179195)
chr5 (143-214)||(2414355-2414426)
[»] chr1 (11 HSPs)
chr1 (69-214)||(18527064-18527200)
chr1 (140-210)||(14939027-14939097)
chr1 (140-210)||(14944271-14944341)
chr1 (141-207)||(50616279-50616345)
chr1 (141-207)||(50624107-50624173)
chr1 (140-204)||(14949050-14949114)
chr1 (140-203)||(49251282-49251345)
chr1 (84-123)||(35322924-35322963)
chr1 (94-137)||(28361548-28361591)
chr1 (140-206)||(270607-270673)
chr1 (162-214)||(42105672-42105724)
[»] chr4 (6 HSPs)
chr4 (146-214)||(28910934-28911002)
chr4 (55-214)||(46029753-46029906)
chr4 (55-214)||(46258466-46258617)
chr4 (55-214)||(2357720-2357871)
chr4 (154-214)||(7982763-7982823)
chr4 (146-214)||(47806536-47806603)
[»] chr3 (1 HSPs)
chr3 (157-211)||(13618707-13618761)
[»] chr6 (1 HSPs)
chr6 (140-203)||(16914292-16914355)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 35413793 - 35413595
Alignment:
Q  18 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35413793 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaacgtgggtagaagacaattattagaaaagattttatttg 35413694  T
Q  118 at--ttttccatttttaacactcataacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  35413693 atttttttccatttttaacactcataacacttaagatgatgtgtttaattggatgaatttaattggttgatagtgtaaagttgttttacactgttagtc 35413595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 36718855 - 36719041
Alignment:
Q  18 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36718855 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttg 36718954  T
Q  118 atttttccatttttaacactcataacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36718955 atttttccatttt---------taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttaca-tgtcagtc 36719041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 3868265 - 3868195
Alignment:
Q  144 acttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||||||||||||||| ||||| | ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  3868265 acttaagatgatgtgtttaatttggtgattttaattggttgatagtgcaaaattgttttacactgtcagtc 3868195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 36718324 - 36718260
Alignment:
Q  150 gatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  36718324 gatgatgcgtctaattgaatggattttattggttgatggtgtaaaattgttttacaatgtcagtc 36718260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 36719078 - 36719129
Alignment:
Q  254 aaatcaattctagaatcaacacttcaagtaaaatcaattaaaagacaaaatc 305  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  36719078 aaatcaattctagaatcaacacttcaagtaaaatcaattacaaaacaaaatc 36719129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 17636955 - 17636852
Alignment:
Q  18 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||     
T  17636955 gaaagaatgcaacatcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaacgtgggtagaagacaattattagaaaatattttatttt 17636856  T
Q  118 attt 121  Q
    ||||    
T  17636855 attt 17636852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 8790630 - 8790565
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttaca 205  Q
    |||||||||||||||||||||||||||| ||| | |||| | ||||| ||||||| || |||||||    
T  8790630 taacacttaagatgatgtgtctaattgggtgattctaatcgattgatagtgtaaagttattttaca 8790565  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 16939095 - 16939150
Alignment:
Q  152 tgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacact 207  Q
    ||||||||||||||   ||| |||||||||||||  ||||||||||||||||||||    
T  16939095 tgatgtgtctaatttagtgattttaattggttgacagtgtaaaattgttttacact 16939150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 26303457 - 26303628
Alignment:
Q  30 catcataatgaagattaaaaatggctaaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttgat-ttttccatt 128  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| ||  |  ||||||||||||  ||| |||||||||||||||||||| |||||||||    
T  26303457 catcataatgcagattgaaaatgactaaatcaaatgtccaaattcaatgaaatgggtagaagactgtta-tagaaaagattttatttgatattttccatt 26303555  T
Q  129 tttaacactcataacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtca 211  Q
    |||||||||  |||        |||| ||||||||||| |||||||||| | |||||||||||||| ||||||||||| ||||    
T  26303556 tttaacact--taa--------atgacgtgtctaattgaatgaatttaactagttgatggtgtaaagttgttttacaccgtca 26303628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 23074936 - 23074812
Alignment:
Q  88 gaagacaattattagaaaagattttatttgatt-tttccatttttaacactcataacacttaagatgatgtgtctaattggatgaatttaattggttgat 186  Q
    |||| |||||||| ||||| ||||||||||||| ||||| ||||||||| |  ||| | ||||||| |||||||||||||| ||| ||||||||||||||    
T  23074936 gaaggcaattattggaaaatattttatttgattgtttccttttttaacagt--taaga-ttaagattatgtgtctaattgggtgattttaattggttgat 23074840  T
Q  187 ggtgtaaaattgttttacactgtcagtc 214  Q
      ||||||||||||||||| | ||||||    
T  23074839 aatgtaaaattgttttacattctcagtc 23074812  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 27179121 - 27179195
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||||||||| |||||| |||||||| |||| ||||||| |||||| |||||||||| ||||||| ||||||||    
T  27179121 taacacttaagttgatgtatctaattgaatgattttaattagttgatagtgtaaaattattttacattgtcagtc 27179195  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 2414355 - 2414426
Alignment:
Q  143 cacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||||||||||| |||| |||||| |||| |||||||||||||   |||||| || ||||||||||||||||    
T  2414355 cacttaagatgaggtgtttaattgaatgattttaattggttgacaatgtaaacttattttacactgtcagtc 2414426  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 18527200 - 18527064
Alignment:
Q  69 aaattaaaaaatgtgggtagaagacaattattagaaaagattttatttgatttttccatttttaacactcataacacttaagatgatgtgtctaattgga 168  Q
    ||||||||||||||||| | | |||||||||| |||| ||||||||||||||||||| |||||        ||||||||||||||||||||||||||| |    
T  18527200 aaattaaaaaatgtggg-atatgacaattattggaaa-gattttatttgatttttccttttttt-------taacacttaagatgatgtgtctaattgaa 18527110  T
Q  169 tgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||| |||||||||||||| ||||||| ||||||  |||||| ||||    
T  18527109 tgattttaattggttgatagtgtaaagttgtttcgcactgttagtc 18527064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 14939097 - 14939027
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtc 210  Q
    ||||||||||||| ||||||||||||| |||| ||||||| |||||| |||||||||||||||||| ||||    
T  14939097 taacacttaagataatgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtc 14939027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 14944341 - 14944271
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtc 210  Q
    ||||||||||||| ||||||||||||| |||| ||||||| |||||| |||||||||||||||||| ||||    
T  14944341 taacacttaagataatgtgtctaattgtatgattttaattagttgatagtgtaaaattgttttacattgtc 14944271  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 50616279 - 50616345
Alignment:
Q  141 aacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacact 207  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||    
T  50616279 aacacttaagacgatgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacact 50616345  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 50624107 - 50624173
Alignment:
Q  141 aacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacact 207  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||    
T  50624107 aacacttaagacgatgtgtctaatttgatgattttaattggttgatagtgtaaagttgttttacact 50624173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 14949114 - 14949050
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttac 204  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||  ||||||||||||||||    
T  14949114 taacacttaagatgatgtgtctaattgtatgattttaattagttgataatgtaaaattgttttac 14949050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 49251282 - 49251345
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgtttta 203  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||||| ||||||||    
T  49251282 taacacttaagatgatgtgtctaattggacgatgttaattggttgatagtgtaaagttgtttta 49251345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 35322963 - 35322924
Alignment:
Q  84 ggtagaagacaattattagaaaagattttatttgattttt 123  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  35322963 ggtagaagacaattattacaaaagattttatttgattttt 35322924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 28361548 - 28361591
Alignment:
Q  94 aattattagaaaagattttatttgatttttccatttttaacact 137  Q
    |||||||||  ||||||||||||||||||||| |||||||||||    
T  28361548 aattattagttaagattttatttgatttttccttttttaacact 28361591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 270607 - 270673
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacac 206  Q
    ||||||||||||  | |||| ||||||||||| |||||||| ||||| ||||||| || ||||||||    
T  270607 taacacttaagaaaaggtgtttaattggatgattttaattgtttgatagtgtaaacttattttacac 270673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 42105724 - 42105672
Alignment:
Q  162 aattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||| ||||| |||||||||||||  ||||||| |||||||||| ||||||||    
T  42105724 aattagatgattttaattggttgacagtgtaaacttgttttacattgtcagtc 42105672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 28910934 - 28911002
Alignment:
Q  146 ttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||||||||||||| ||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  28910934 ttaagatgatgtgtttaattggatgattttaatcggttgatagtgtaaatttgttttacactgtcagtc 28911002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 46029906 - 46029753
Alignment:
Q  55 taaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttgatttttccatttttaacactcataacacttaagatga 154  Q
    ||||||||||| ||||||||| |||  ||||||||||||| ||||| ||||| | ||||||||||||||   ||| ||    |  |||||||||||||||    
T  46029906 taaatcaaatgaccaaattaagaaacatgggtagaagacatttattggaaaaaaatttatttgattttt---tttctat---ttttaacacttaagatga 46029813  T
Q  155 tgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||||||||  ||| | | |||||||||||| ||||||| ||||||||||  |||||||    
T  46029812 tgtgtctaatgagataattataattggttgatagtgtaaagttgttttacatcgtcagtc 46029753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 46258466 - 46258617
Alignment:
Q  55 taaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttgatttttccatttttaacactcataacacttaagatga 154  Q
    ||||||||||| ||||||||| |||   |||||||||| | ||||| |||||  ||||||||||||||| |  ||||        |||||||||||||||    
T  46258466 taaatcaaatgaccaaattaagaaacacgggtagaagaaatttattggaaaaatttttatttgattttttctatttt--------taacacttaagatga 46258557  T
Q  155 tgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||||||||  ||| | | |||||||||||| ||||||| || ||||||| ||||||||    
T  46258558 tgtgtctaatgagataattataattggttgatagtgtaaagttattttacattgtcagtc 46258617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 2357871 - 2357720
Alignment:
Q  55 taaatcaaatgtccaaattaaaaaatgtgggtagaagacaattattagaaaagattttatttgatttttccatttttaacactcataacacttaagatga 154  Q
    |||||| |||| ||||||||| ||| ||||||| ||| ||  |||  ||||||||| |||||||||||||  |||||        ||||| |||||||||    
T  2357871 taaatccaatgcccaaattaagaaacgtgggtacaaggcatatatcggaaaagattgtatttgatttttcatttttt--------taacatttaagatga 2357780  T
Q  155 tgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||| |||| |||  | |||||||||||||| || |||| |||||||||||||| ||||    
T  2357779 tgtgtttaatcggagaattttaattggttgatagtctaaagttgttttacactgttagtc 2357720  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 7982763 - 7982823
Alignment:
Q  154 atgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    |||||||||||||| ||| |||||||| |||||  |||||| |||||||||| ||||||||    
T  7982763 atgtgtctaattgggtgattttaattgattgataatgtaaagttgttttacattgtcagtc 7982823  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 47806603 - 47806536
Alignment:
Q  146 ttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtcagtc 214  Q
    ||||| |||| ||| ||||||  ||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  47806603 ttaagttgatatgtttaattgagtgattttaattggttgacggtgt-aaattgttttacgctgtcagtc 47806536  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 13618707 - 13618761
Alignment:
Q  157 tgtctaattggatgaatttaattggttgatggtgtaaaattgttttacactgtca 211  Q
    |||||||||| |||| ||||| | |||||||||||||| ||||||||||||||||    
T  13618707 tgtctaattgaatgagtttaactagttgatggtgtaaagttgttttacactgtca 13618761  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 16914292 - 16914355
Alignment:
Q  140 taacacttaagatgatgtgtctaattggatgaatttaattggttgatggtgtaaaattgtttta 203  Q
    |||||||||||| || |||| ||||||||| | ||| |||||||||| ||||||| ||||||||    
T  16914292 taacacttaagaggaggtgtttaattggataatttttattggttgatagtgtaaacttgtttta 16914355  T

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