View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_38 (Length: 279)
Name: NF15324_high_38
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 54770468 - 54770213
Alignment:
| Q |
1 |
tttttgttatttagaggattacatacaataaatatcgtagtaacttgtctaaattaacatttttctcaattttattttaagaaattaaatgttggataca |
100 |
Q |
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| T |
54770468 |
ttttttttatttagaggattacatacaataaatatcgtagtaacttgtctaaattaacatttttctcaattttattttaagaaattaaatgttggatata |
54770369 |
T |
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| Q |
101 |
tannnnnnnnacaatggtccaaaacttgttaatgaaaaggg--tataactagtgtgtatatagtctggtttttattgatctcttgaaatttagctgtcaa |
198 |
Q |
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| T |
54770368 |
ttttttttttacgatggtccaaaacttgttaatgaaaagggtatataactagtgtgtatatagtctggtttttattgatctcttgaaatttagctgtca- |
54770270 |
T |
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| Q |
199 |
tacaagtcagctggtatatatgtgatatatggtgctctaccactaagtccgaccgactattcatgcctttgc |
270 |
Q |
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| T |
54770269 |
---------------atatatgtgatatatggtgctctaccactaagtccgaccgactattcatgcctttgc |
54770213 |
T |
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