View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_40 (Length: 267)
Name: NF15324_high_40
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 27206239 - 27206048
Alignment:
| Q |
61 |
accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
160 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206239 |
accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
27206140 |
T |
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| Q |
161 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgcagggagtt |
252 |
Q |
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| T |
27206139 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaatagtatgcagggagtt |
27206048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 13003415 - 13003594
Alignment:
| Q |
66 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
165 |
Q |
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|||||| | |||| |||||||||||||||||| | |||| | ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |
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| T |
13003415 |
ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat |
13003514 |
T |
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| Q |
166 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataatatgca |
245 |
Q |
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| T |
13003515 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgca |
13003594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 31252171 - 31251998
Alignment:
| Q |
66 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
165 |
Q |
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| T |
31252171 |
ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat |
31252072 |
T |
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| Q |
166 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataa |
239 |
Q |
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|||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| |
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| T |
31252071 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataa |
31251998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 31094209 - 31094350
Alignment:
| Q |
66 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
165 |
Q |
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|||| ||| ||||||||||||||| |||||| | | |||| | ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
31094209 |
ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat |
31094308 |
T |
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| Q |
166 |
tctgtgaactcac---aacaaaacaaatgttttgttagtcat |
204 |
Q |
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| T |
31094309 |
tctgtgaactcacaagaagaaaaaaaaagttttgttagtcat |
31094350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
| Q |
67 |
tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt |
166 |
Q |
| |
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||||||| |||||||||||||||||||| || || ||||| | ||||| |||||| |||||||||| ||| || || |||||||||||||||||| | |
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| T |
16162891 |
tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact |
16162792 |
T |
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| Q |
167 |
ctgt |
170 |
Q |
| |
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|||| |
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| T |
16162791 |
ctgt |
16162788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 27206476 - 27206427
Alignment:
| Q |
20 |
ataagtgagcagtacaccctattgaaaatttccctgaaaccaccaactct |
69 |
Q |
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|||||||||||||||| ||||||| || |||||| |||||||||||||| |
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| T |
27206476 |
ataagtgagcagtacatcctattgggaagttccctaaaaccaccaactct |
27206427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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