View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_41 (Length: 266)
Name: NF15324_high_41
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 23862783 - 23862552
Alignment:
| Q |
16 |
atcatcctgaaagccaaaattttatttctatgnnnnnnntccaaaaattcatcccaaattcatcaacaaactcatctttatgttaaacccaaaaattcag |
115 |
Q |
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| T |
23862783 |
atcatcctgaaagccaaaattttatttctatgaaaaaaatccaaaaattcatcccaaattcatcaacaaactcatctttatgttaaacccaaaaattcag |
23862684 |
T |
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| Q |
116 |
ttgcagtaaattccacagacagagaagccacactaactacaagaatttctctctgaactactactatcaacctcttggattgcaacagtaacaacaagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23862683 |
ttgcagtaaattccacagacagagaagccacactaactacaagaatttctctctgaactactactatcaacctcttggattgcaacagtaacaacaagaa |
23862584 |
T |
|
| Q |
216 |
acctcttggaattagcaattgaatccatgtct |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23862583 |
acctcttggaattagcaattgaatccatgtct |
23862552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 44506979 - 44507048
Alignment:
| Q |
58 |
aaaaattcatcccaaattcatcaacaaactcatctttatgttaaacccaaaaattcagttgcagtaaatt |
127 |
Q |
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| T |
44506979 |
aaaaattcatcccaaattcattcactaactcatcttcatgttaaatagagaaattcacttgcagtaaatt |
44507048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 35640478 - 35640434
Alignment:
| Q |
58 |
aaaaattcatcccaaattcatcaacaaactcatctttatgttaaa |
102 |
Q |
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| T |
35640478 |
aaaaattcatcccaaattcatccactaactcatcttcatgttaaa |
35640434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 39820262 - 39820217
Alignment:
| Q |
58 |
aaaaattcatcccaaattcatcaacaaactcatctttatgttaaac |
103 |
Q |
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| T |
39820262 |
aaaaattcatcccaaattcattcactaactcatcttcatgttaaac |
39820217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 13520425 - 13520386
Alignment:
| Q |
55 |
tccaaaaattcatcccaaattcatcaacaaactcatcttt |
94 |
Q |
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| T |
13520425 |
tccaaaaattcatcacaagttcatcaacaaactcatcttt |
13520386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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