View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_high_44 (Length: 258)
Name: NF15324_high_44
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_high_44 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44147294 - 44147533
Alignment:
| Q |
1 |
tttcttctgttggagggagtgacccaaatggctctaatgccacaaacagcagcaacaggtttgctttcacagaatatcgccctaccatcgctcacctcag |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
44147294 |
tttcttctgttggaggcagtgacccaaatggctctaatgccacaaacagcagcaacaggtttgctttcacagaatattgccctaccaacgctcacctcag |
44147393 |
T |
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| Q |
101 |
aatcactcgcattcacggatcttttttcaacttccctttgaaaaacaatattcccaaactggagggtggttgtacacaccttcctttcttttttccttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
44147394 |
aatcactcgcattcacggatcttttttcaacttccctttgaaaaacaatattcccaaactggagggtggttggacacaccttcctttcctttttccttgc |
44147493 |
T |
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| Q |
201 |
attatcataatgcccagtatctgagcaagacacaactctg |
240 |
Q |
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| T |
44147494 |
attatcataatgcccagtatctgagcaagacacaactctg |
44147533 |
T |
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Target: scaffold0036 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7500 - 7676
Alignment:
| Q |
1 |
tttcttctgttggagggagtgacccaaatggctctaatgccacaaacagcagcaacaggtttgctttcacagaatatcgccctaccatcgctcacctcag |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||||||| |
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| T |
7500 |
tttcttctgttggatggagtgacccaaatggctctaatgccacaaacagcagcaacagggttgctttcgcagaagattgccctaccatccatcacctcag |
7599 |
T |
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| Q |
101 |
aatcactcgcattcacggatcttttttcaacttccctttgaaaaacaatattcccaaactggagggtggttgtacac |
177 |
Q |
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||||| || ||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
7600 |
aatcattcacattcacagcttttttttcaacttccctttgaaaaacaatattcccaaactggagagtggttggacac |
7676 |
T |
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