View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_10 (Length: 510)
Name: NF15324_low_10
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 12692741 - 12693221
Alignment:
| Q |
18 |
tgaagctcgcataaacacatttcaatcgtatgaaagtctgaaaacaattgcat---tatttccactctgtttaccaacaaagattccaactatgatatgc |
114 |
Q |
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| T |
12692741 |
tgaagctcgcataaacacatttcaatcgtatgaaagtctgaaaacaattgcatgattatttctactatgtttaccaacaaagattccaactatgatatgc |
12692840 |
T |
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| Q |
115 |
ttgtcgggattgagtatcactctttcaatctaaccgatggtatcttcctctttccaagtgaaaatcaacataatgtttgatttcatgtactacatataaa |
214 |
Q |
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| T |
12692841 |
ttgtcgggattgagtatcactctttcaatctaaccgatggtatcttcctctttccaagtgaaaatcaacataatgtttgatttcatgtactacatataaa |
12692940 |
T |
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| Q |
215 |
catcatggtggttattacttcggaaggtgaggataccagcaattggattgaaagattttcatatcgtagttggaatcgttgtttttaaagattttggaaa |
314 |
Q |
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| T |
12692941 |
catcatggtggttattacttcagacggtgaggataccagcaattggattgaaagattgccatatcgtagttggaatcgttgtttttaaagattttgaaaa |
12693040 |
T |
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| Q |
315 |
cgaagcttcaattgttatttgtctttcatacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtatt |
414 |
Q |
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| T |
12693041 |
cgatgcttcaattgttatttgtctttcatacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtatt |
12693140 |
T |
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| Q |
415 |
ttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctttg |
495 |
Q |
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| T |
12693141 |
ttatactaattttgatttcgatgttatagaaaggtctgctccacacaaactagtggtttaaagctagatgataaacctttg |
12693221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 12689431 - 12689355
Alignment:
| Q |
417 |
atactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
493 |
Q |
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| T |
12689431 |
atactaattttgaattcaatgttataggaaggtgtgctccacacaacctagtggttaaaagctagatgataaacctt |
12689355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 493
Target Start/End: Complemental strand, 12696164 - 12696067
Alignment:
| Q |
396 |
gaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
493 |
Q |
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| T |
12696164 |
gaattcatttagttggagtcaatactaattttgaaatcaatgttatagtaacgtgtgctccacacaacctagtggttgaaagctagacgataaacctt |
12696067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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