View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_11 (Length: 496)
Name: NF15324_low_11
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 50101122 - 50101595
Alignment:
| Q |
1 |
aacacaacaacatatcagtgcaaaacaattctcaaaactctttctttttctctcaacaactttttcaaagtaataataatcacttgttgcgcgggaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101122 |
aacacaacaacatatcagtgcaaaacaattctcaaaactctctctttttctctcaacaactttttcaaagtaataataatcacttgttgcgcgggaaagc |
50101221 |
T |
|
| Q |
101 |
gcttcttatcaatccnnnnnnnnnnnnnnnnnactcgttcgttccttcgttcaccgtgaaactattcagttacggttgcgaaagaggaacgataacaatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101222 |
gcttcttatcaatc----tctctctctctctcactcgttcgttccttcgttcaccgtgaaactattcagttacggttgcgaaagaggaacgataacaatg |
50101317 |
T |
|
| Q |
201 |
caaaccattgaagaagaagaagctgttggaagcgatgttcaggattctccttcacatttcgagattttgaagctacgtcaacgttgggaactcgcttccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101318 |
caaaccattgaagaagaagaagctgttggaagcgatgttcaggattctccttcacatttcgagattttgaagctacgtcaacgttgggaactcgcttccg |
50101417 |
T |
|
| Q |
301 |
ttctccatttccttgacgtaagatattcgcgtcattcatcctctggttcgaatgttcctattaggttacgattcgtaatcatctcagtaacattttttgt |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50101418 |
ttctccatttccttgacgtaagatattcgcgttattcatcgtctggttcgaatgttcctattaggttacgattcgtaatcatcttagtaacattttttgt |
50101517 |
T |
|
| Q |
401 |
ggttcgtgtgattcaggtgtttagtccattacttggtaatgatctgaaggttacagccgaagaaattgagatcggact |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101518 |
ggttcgtgtgattcaggtgtttagtccattacttggtaatgatctgaaggttacagccgaagaaattgagatcggact |
50101595 |
T |
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