View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_14 (Length: 431)

Name: NF15324_low_14
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_14
NF15324_low_14
[»] chr3 (3 HSPs)
chr3 (213-353)||(42277794-42277923)
chr3 (42-133)||(42278005-42278090)
chr3 (300-353)||(48166294-48166347)
[»] chr4 (1 HSPs)
chr4 (252-352)||(20674292-20674394)
[»] chr7 (1 HSPs)
chr7 (311-350)||(46833641-46833680)
[»] chr6 (1 HSPs)
chr6 (218-257)||(12604751-12604790)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 42277923 - 42277794
Alignment:
Q  213 agcaacaatcttcggaaatttttgggttgttgatgtgtgttgttgatttttatctggatcggataaatttgatgaatgttttgaatgtgttgttgatctg 312  Q
    |||||||||||| ||||||||||||||||||||||          |||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  42277923 agcaacaatcttaggaaatttttgggttgttgatg----------attttttt-tggattggatagatttgatgaatgttttgaatgtgttgttgatctg 42277835  T
Q  313 ttgttgttttgaaggatttagagtttgctgagattgagaga 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42277834 ttgttgttttgaaggatttagagtttgctgagattgagaga 42277794  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 42278090 - 42278005
Alignment:
Q  42 ttaaaacccagcaacaattaatgcaagaatacaacaagagattgaaatcgaaatacaaaaacccagcaacaattttgggttgttgttaatcc 133  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||      ||||||| ||||||||||||||||||||||||||||||    
T  42278090 ttaaaacccaacaacaattaatgcaagaatacaacaagaaattgaaat------acaaaaatccagcaacaattttgggttgttgttaatcc 42278005  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 48166294 - 48166347
Alignment:
Q  300 tgttgttgatctgttgttgttttgaaggatttagagtttgctgagattgagaga 353  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||    
T  48166294 tgttgttgatctgttgttgttttgaaggatatagggtttgatgagcttgagaga 48166347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 20674394 - 20674292
Alignment:
Q  252 ttgttgatttttatctggatcggataaatttgatgaatgttttgaatgtgttgttg---atctgttgttgttttgaaggatttagagtttgctgagattg 348  Q
    |||||||||||| | ||||| |||||||||| ||||| ||||||||||||||||||   |||||||| |||||||| |||||||||||||||||||||||    
T  20674394 ttgttgattttttt-tggattggataaatttaatgaaagttttgaatgtgttgttgttgatctgttgctgttttgagggatttagagtttgctgagattg 20674296  T
Q  349 agag 352  Q
    ||||    
T  20674295 agag 20674292  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 46833680 - 46833641
Alignment:
Q  311 tgttgttgttttgaaggatttagagtttgctgagattgag 350  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  46833680 tgttgttgttttgagggatttagagttttctgagattgag 46833641  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 12604751 - 12604790
Alignment:
Q  218 caatcttcggaaatttttgggttgttgatgtgtgttgttg 257  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  12604751 caatcttctgaaatttttggattgttgatgtgtgttgttg 12604790  T

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