View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_16 (Length: 427)
Name: NF15324_low_16
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 393
Target Start/End: Original strand, 19790130 - 19790454
Alignment:
| Q |
52 |
gtatgagggataatataacatgtaaaatgcaggttaattcccttgagctatgtttgtattagaaaaagaattagaaaatccgaatttaaactctagttaa |
151 |
Q |
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| T |
19790130 |
gtatgagggataatataacatgtaaaatgcaggttaattcccttgagctctgtttgtattaaa--------tagaaaatccgaatttaaactctagttaa |
19790221 |
T |
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| Q |
152 |
gaagaaatgactaagttataagcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttattagctagtgattgtaagctcacaag |
251 |
Q |
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| T |
19790222 |
gaagaaatgac---------agcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttattagctagtgattgtaagctcacaag |
19790312 |
T |
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| Q |
252 |
ttggcattgccaaacatatcataaaactcattttcttaggcttattcattgtttcactcctcctagtttaactcactcacaaaattggttcccctattca |
351 |
Q |
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| T |
19790313 |
ttggcattgccaaacatattataaaactcattttcttaggcttattcattgtttcactcctcctagtttaactcactcacaaaattggttcccctattta |
19790412 |
T |
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| Q |
352 |
aaaatcacacacttttgatccctccaataaattttagaattt |
393 |
Q |
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| T |
19790413 |
aaaatcacacacttttgatccctccaataaattttagaattt |
19790454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 13263518 - 13263569
Alignment:
| Q |
167 |
ttataagcttgtgagaaa-tgattgttaccaaacaaatctattttggtcata |
217 |
Q |
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| T |
13263518 |
ttataagcttgtgagaaaatgattgttaccaaacaagtctattttagtcata |
13263569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 8035468 - 8035403
Alignment:
| Q |
167 |
ttataagcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttattagcta |
232 |
Q |
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| T |
8035468 |
ttatatgctcgtgagaaagaattgttaccaaacaagtctattttgatcatatgaacttataagcta |
8035403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 31411913 - 31411868
Alignment:
| Q |
187 |
attgttaccaaacaaatctattttggtcatatgaacttattagcta |
232 |
Q |
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| T |
31411913 |
attgttaccaaacatttctattttggtcatatgaatttattagcta |
31411868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 5288044 - 5288099
Alignment:
| Q |
171 |
aagcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttat |
226 |
Q |
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| T |
5288044 |
aagctcgtgagaaagaagtgttaccaaacaagtctattttgctcatatgaacttat |
5288099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 35470660 - 35470725
Alignment:
| Q |
167 |
ttataagcttgtgagaaatgattgttaccaaacaaatctattttggtcatatgaacttattagcta |
232 |
Q |
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| T |
35470660 |
ttataagcttgtgaaaaaatattgttacctaacaattttattttgatcttatgaacttataagcta |
35470725 |
T |
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