View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_17 (Length: 421)
Name: NF15324_low_17
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 43245901 - 43246309
Alignment:
| Q |
1 |
accttttacatacaccttataatattgtacatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaaggnnnnnnn--tagagtatat |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43245901 |
accttttacatacaccttataatattgtacatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaaggaaaaaaaaatagagtatat |
43246000 |
T |
|
| Q |
99 |
gttttcaagtattaagaaatat--agcagctcttttatttattccatttcataaacaaccaattacattctttgcttaaataacaataccaagcaaaaac |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246001 |
gttttcaagtattaagaaatatatagcagctcttttatttattccatttcataaacaaccaattacattctttgcttaaataacaataccaagcaaaaac |
43246100 |
T |
|
| Q |
197 |
aaatatcgatattatttattattacaccaagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggtcacactatagct |
296 |
Q |
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| T |
43246101 |
aaatatcgatattatttattattacaccaagtcaccaattaatcaatgcaaaaatcaaataaattttagtagtggccactttattggttacactatagct |
43246200 |
T |
|
| Q |
297 |
catcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcg |
396 |
Q |
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| T |
43246201 |
cttcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcg |
43246300 |
T |
|
| Q |
397 |
ttactccta |
405 |
Q |
| |
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||||||||| |
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| T |
43246301 |
ttactccta |
43246309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 121 - 405
Target Start/End: Original strand, 8532429 - 8532727
Alignment:
| Q |
121 |
agcagctcttttatttattccatttcataaacaaccaattacattctttgcttaa-----ataacaataccaagcaaaaacaaatatcgatattatttat |
215 |
Q |
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||||||||||||||| |||| ||||||||||| |||||||||| ||| ||||| ||||||||||||| |||||| || || | | |||||||| |
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| T |
8532429 |
agcagctcttttattcattc-atttcataaactaccaattacaaatttttcttaattaatataacaataccaaacaaaaataa-tagcaaatttatttat |
8532526 |
T |
|
| Q |
216 |
tattacaccaagtcaccaattaatcaatgcaaaa----atcaaataaattttagtagtggccactttatt--ggtcacac-tatagct-----catctta |
303 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| || |||||| |
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| T |
8532527 |
tattacaccaagtcaccaattaatcaacgcaaattaagatcaaataaattttagtagaggctgctttattttggtcacatatata-ctgtatacatcttg |
8532625 |
T |
|
| Q |
304 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
403 |
Q |
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| T |
8532626 |
atcggtttcaaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactcc |
8532725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 8551391 - 8551493
Alignment:
| Q |
303 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
402 |
Q |
| |
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||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
8551391 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactc |
8551490 |
T |
|
| Q |
403 |
cta |
405 |
Q |
| |
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||| |
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| T |
8551491 |
cta |
8551493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 8540896 - 8540997
Alignment:
| Q |
304 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
403 |
Q |
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|||||| | |||||||| ||||| |||||||| ||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
|
| Q |
404 |
ta |
405 |
Q |
| |
|
|| |
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|
| T |
8540996 |
ta |
8540997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 8551272 - 8551353
Alignment:
| Q |
147 |
ataaacaaccaattacattctttgcttaa---ataacaataccaagcaaaaacaaatatcgatattatttattattacacca |
225 |
Q |
| |
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||||||||||||||||| | ||||||||| |||||||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
8551272 |
ataaacaaccaattacaatttttgcttaattaataacaatactaaacaaaaacaaatgtcagtattatttattattacacca |
8551353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 8551125 - 8551195
Alignment:
| Q |
11 |
tacaccttataatattgtacatgtttactatgaaacatgtaatagttata-gaaaaactgcaaatatgaag |
80 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||| ||| ||| ||||| |||||| ||||| ||||||| |
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| T |
8551125 |
tacaccttataatattgtacatctttactaaaaaacgtgtcataattataggaaaaattgcaattatgaag |
8551195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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