View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_2 (Length: 690)
Name: NF15324_low_2
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 123 - 644
Target Start/End: Original strand, 20587843 - 20588345
Alignment:
| Q |
123 |
tgagagtgtccaaaagtattaggttaaattaaaggtaaccnnnnnnntggataaggtagactaataggtgagagagtgtccaaggtagaaataacattaa |
222 |
Q |
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| T |
20587843 |
tgagagtgtccaaaagtaataggttaaa-----ggtaaccaaaaaaatggataaggtggactaataggtgagagagtgtccaatgtagaaataacattaa |
20587937 |
T |
|
| Q |
223 |
aagtggtaatagataataacattaaatgaaattcatgttcatggttcttaaataggaaagaaagaaataggaactttgtttccaccaattggtggaaatc |
322 |
Q |
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| T |
20587938 |
aagtggtaatagataataacattaaatgaaattcatgttcatggttctaaaataggaaagaaagaaataagaactttgtttccaccaattggtggaaatg |
20588037 |
T |
|
| Q |
323 |
tctattaaaatgtcttcaaaa-tgtatgactatttcaaattgtgattttgagtaccccattgtacttaaattaataaattatgttatttataaaataatt |
421 |
Q |
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| T |
20588038 |
tctattacaatgtcttcaaaagtgtatgactatttcaaattgtgattttgagtaccccatt-tacttaaattaataaataatgttatttataaaataatt |
20588136 |
T |
|
| Q |
422 |
taatccaaattcagtataagtagcttgatgtgattaaaaataaaaccctctggcaaacaacattaaaacacaaaagtataactatgaattagaccaacta |
521 |
Q |
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| T |
20588137 |
taatccaaattcagtatcggtagcttgatgtgattaaaaata------------aaacaacaataaaacacaaaagtataactatgaattagaccaagta |
20588224 |
T |
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| Q |
522 |
agtcaaatatatatttttaggtaaatcacattgaaattttgttatattcctattaaggaaaatttaattttatatttgattttggcattaattccttaga |
621 |
Q |
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| T |
20588225 |
agtcaaatatata-ttttaggtaaatcacattgaaattttgttatattcctattaaggaaagtttaattttata-ttgattttagcattaattccttaga |
20588322 |
T |
|
| Q |
622 |
gtaacttcggtcttctgtcacca |
644 |
Q |
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| T |
20588323 |
tttactttggtcttcggtcacca |
20588345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 317 - 635
Target Start/End: Original strand, 20575958 - 20576277
Alignment:
| Q |
317 |
gaaatctctattaaaatgtcttcaaaatgtatgactatttcaaattgtgattttgagtaccccattgtacttaaattaataaattatgttatttataaaa |
416 |
Q |
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| T |
20575958 |
gaaatgtccattacaatgtcttcaaagtgtatgactattttaaattgtaattctgagtacctcattgtacttcaattaataaatattgtcatgtataaat |
20576057 |
T |
|
| Q |
417 |
taatttaatccaaattcagtat--aagtagcttgatgtgattaaaaataaaaccctctggcaaacaacattaaaacacaaaagtataactatgaattaga |
514 |
Q |
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| T |
20576058 |
taatttattccaaattccgtatcacagtagcttgatgtcattaaaaataaaaccctctggcaa--aacaacaaaacacaaaagtgtaactatgaattata |
20576155 |
T |
|
| Q |
515 |
ccaactaagtcaaatatatatttttaggtaaatcacattgaaa-ttttgttatattcctattaaggaaaatttaattttatatttgattttggcattaat |
613 |
Q |
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| T |
20576156 |
ccaagtaagtcaaatatttttttttaggtaaatcacagtgaaatttttgttatattcctattaaggaaaacttaatttcatatttgattttagcgttaat |
20576255 |
T |
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| Q |
614 |
tccttagagtaacttcggtctt |
635 |
Q |
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||| || | ||||||| ||||| |
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| T |
20576256 |
tccatatattaacttcagtctt |
20576277 |
T |
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