View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_20 (Length: 413)
Name: NF15324_low_20
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 37958094 - 37957705
Alignment:
| Q |
17 |
agaaaagattgcagaagatattttgnnnnnnntgaatagctttgtcttaagtgagtatgaaggaatgattggaattgacgagcatattgaacgaatccaa |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37958094 |
agaaaagattgcagaagatattttgaaaaaaatgaatagctttgtcttaagtgagtatgaaggaatgattggaattgacgagcatattgaacgaatccaa |
37957995 |
T |
|
| Q |
117 |
cccttgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957994 |
cccttgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaac |
37957895 |
T |
|
| Q |
217 |
tcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957894 |
tcgcaactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaact |
37957795 |
T |
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| Q |
317 |
tctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957794 |
tctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
37957705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 59 - 403
Target Start/End: Original strand, 37929535 - 37929879
Alignment:
| Q |
59 |
tgtcttaagtgagtatgaaggaatgattggaattgacgagcatattgaacgaatccaacccttgttgctcctcaagtcgcagagtgttcgtctcatagga |
158 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||||| | |||||| |||||||| |
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| T |
37929535 |
tgtcttaagtgattatgaaggaatgataggaattgaaaagcatattgaaaaaatccaatccttgttgctcctcgagtcggctactgttcgaatcatagga |
37929634 |
T |
|
| Q |
159 |
atatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaatgtga |
258 |
Q |
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||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| || || |||||||||||||||||| ||||||| ||||||||| |
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| T |
37929635 |
atacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctcaactcagttcagttccaaaagcatcattctaaatgctc |
37929734 |
T |
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| Q |
259 |
aacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatt |
358 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| || ||| ||||||| |
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| T |
37929735 |
aacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagttttcata |
37929834 |
T |
|
| Q |
359 |
tgatccaaggctcaaacggacaaagattctccttgttcttgatga |
403 |
Q |
| |
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||||||||| |||| |||| ||||||||||||||||||| |
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| T |
37929835 |
cattccaaggcttcaacgaggaaaggttctccttgttcttgatga |
37929879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 406
Target Start/End: Complemental strand, 44644770 - 44644518
Alignment:
| Q |
154 |
taggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaa |
253 |
Q |
| |
|
||||||| ||||| |||||||| | ||| |||||||||||||| |||||||| |||| ||| | ||||| || ||||||| | |||||| | ||||| |
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| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
|
| Q |
254 |
tgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttt |
353 |
Q |
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||| ||||||||||||| ||| |||||| ||||| ||| ||| ||||| || || ||||| | ||| ||| ||||||||| || | || |
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| T |
44644670 |
tgttcaacaagaaatagagagatttggactgcaccatatacaaagcaaatatagatttgagcttctgggagaaaacaacacatcctctggattatgtctt |
44644571 |
T |
|
| Q |
354 |
tcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgt |
406 |
Q |
| |
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|||||||||| |||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
44644570 |
tcatttgatcaaaggctcaaatggactaaggctctccttgttcttgatgatgt |
44644518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 25721218 - 25721351
Alignment:
| Q |
151 |
tcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttct |
250 |
Q |
| |
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|||||||||| ||||| |||||||| | ||||||||| ||||||| ||||||| ||||| | | |||||||| |||| ||| || ||||| | || |
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| T |
25721218 |
tcataggaatttggggtatgggaggaataggcaaaaccgaaattgcccgtgcaatatatcacaggtttgcaactcaattcaattctagcagcatgatact |
25721317 |
T |
|
| Q |
251 |
aaatgtgaaacaagaaatagaaagagctggacta |
284 |
Q |
| |
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|||||| ||||||||||| |||||| ||||||| |
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| T |
25721318 |
aaatgttgaacaagaaataaaaagagttggacta |
25721351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
156 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
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| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
156 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
156 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
196 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 34735640 - 34735604
Alignment:
| Q |
160 |
tatggggcatgggagggacaggcaaaacaacaattgc |
196 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
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|
| T |
34735640 |
tatggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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