View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_22 (Length: 405)

Name: NF15324_low_22
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_22
NF15324_low_22
[»] chr4 (13 HSPs)
chr4 (12-390)||(11192436-11192814)
chr4 (17-364)||(11189884-11190233)
chr4 (95-382)||(11179204-11179491)
chr4 (167-367)||(11166205-11166405)
chr4 (57-373)||(11197657-11197957)
chr4 (122-273)||(11160539-11160690)
chr4 (91-388)||(11174532-11174844)
chr4 (306-389)||(11160741-11160824)
chr4 (199-273)||(5646597-5646671)
chr4 (199-273)||(11182099-11182173)
chr4 (133-212)||(11240855-11240934)
chr4 (17-47)||(11179541-11179571)
chr4 (201-273)||(11932023-11932095)
[»] chr5 (4 HSPs)
chr5 (95-262)||(36686949-36687116)
chr5 (318-382)||(36686811-36686875)
chr5 (201-273)||(8991411-8991483)
chr5 (201-273)||(8981906-8981978)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 11192814 - 11192436
Alignment:
Q  12 atactcactcacgcctattcttttcaaactcagagatagatacaaatttaaggtttcaaagacatggcatcatcgtcgtcgaagaagatcatccttaaga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11192814 atactcactcacgcctattcttttcaaactcagagatagatacaaatttaaggtttcaaagacatggcatcattgtcgtcgaagaagatcatccttaaga 11192715  T
Q  112 gttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaat 211  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  11192714 gttatgagggcgagacctttgaaatagaagaggcggtggcaatgcaatcccagacgatcaagcttttgatagacgatgactgtgccaacgacactggaat 11192615  T
Q  212 ccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192614 ccctatttcgaacgtaaccagcaagatcttggccatggttattgagtattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggac 11192515  T
Q  312 actgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatttaaacatcaaaagtctgt 390  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11192514 gctgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatctaaacatcaaaagtctgt 11192436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 11190233 - 11189884
Alignment:
Q  17 cactcacgcctattcttttcaaactcagagatagatacaaa--tttaaggtttcaaagacatggcatcatcgtcgtcgaagaagatcatccttaagagtt 114  Q
    ||||||||||||||||||||||||||||||| ||| |||||  |||| |||||| ||  |||||||||||| ||   ||||||||||||||| |||||||    
T  11190233 cactcacgcctattcttttcaaactcagagaaagacacaaaaatttagggtttctaattcatggcatcatcatcaatgaagaagatcatcctgaagagtt 11190134  T
Q  115 atgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccc 214  Q
     ||| ||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||| | |||| |||||||||| ||||||| ||||||    
T  11190133 ctgaaggcgagacctttgaaatcgaagaggcggtggcagttcaatcgcagacgatcaagcatttgatcggcgaccagtgtgccaatgacactgaaatccc 11190034  T
Q  215 tatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacact 314  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  11190033 tatttcgaacgtaacaggcaagatcttggccatggttattgagtattgcaagaaacatgttgatgctgtaagttctgatgagcttaggaagtgggacgct 11189934  T
Q  315 gagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgc 364  Q
    || ||||||||||| ||||||||||||||||| || ||||||| ||||||    
T  11189933 gaatttgtccaggtcgatcaagatactctcttgaaactcatcttggctgc 11189884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 95 - 382
Target Start/End: Complemental strand, 11179491 - 11179204
Alignment:
Q  95 gaagatcatccttaagagttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgt 194  Q
    |||||||||| | ||||||| ||| |||||||||||| |||| ||| ||| ||||||| ||||||||||||||||||||| |||||| ||||| ||||||    
T  11179491 gaagatcatcttgaagagttctgatggcgagacctttaaaatcgaaaaggcggtggcaatgcaatcccagacgatcaagcatttgatcgacgaggagtgt 11179392  T
Q  195 gccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatgctgatgatgtaagttctgatg 294  Q
    ||||||||||||||||||||| |  |||| |||||  ||||||||||||| ||||||||||| |||||||||||||||| ||||| || |||||||||||    
T  11179391 gccaacgacactggaatccctttaacgaatgtaactggcaagatcttggctatggttattgagtattgcaagaaacatgttgatgctgcaagttctgatg 11179292  T
Q  295 agcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatttaaacatcaa 382  Q
    |||||  |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  11179291 agcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcaatctcatcatggctgccaactatttaaacatcaa 11179204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 167 - 367
Target Start/End: Complemental strand, 11166405 - 11166205
Alignment:
Q  167 gatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaag 266  Q
    |||| ||| ||||||  |||||| |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  11166405 gatcgagcatttgatccacgacgggtgtaccaaccacattggaatccctatttcgaacgtaaccggcaagatcttggctatggttattgagtattgcaag 11166306  T
Q  267 aaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgcta 366  Q
    ||||||| ||||| || |||||||||||| |||  |||||||||| |||| |||| | || ||||||||||||||||||| || ||||||| ||||||||    
T  11166305 aaacatgttgatgctgcaagttctgatgaacttgagaagtgggacgctgaatttgacaagattgatcaagatactctcttgaaactcatcttggctgcta 11166206  T
Q  367 a 367  Q
    |    
T  11166205 a 11166205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 57 - 373
Target Start/End: Complemental strand, 11197957 - 11197657
Alignment:
Q  57 atttaaggtttcaaagacatggcatcatcgtcgtcg---aagaagatcatccttaagagttatgagggcgagacctttgaaatagaagaggtggtggcag 153  Q
    ||||| |||||||||| |||||||||||| |||||    |||||||||||||| |||||||||||||||||||||||||||||                     
T  11197957 atttacggtttcaaagtcatggcatcatcatcgtcctcaaagaagatcatcctgaagagttatgagggcgagacctttgaaat----------------- 11197875  T
Q  154 tgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttat 253  Q
     ||||||| |||||||||||| ||||||  || | || ||||||||| | | ||||||| |||||||||||  |||   |||||||||||| ||| ||||    
T  11197874 -gcaatcctagacgatcaagcatttgatcaacaatgaatgtgccaacaaaaatggaatcactatttcgaacacaactgacaagatcttggctatgtttat 11197776  T
Q  254 tgaatattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctc 353  Q
    ||| |||||||||||||||| | ||| |  ||||| ||||| ||||||||| |||||| |||| || ||||| ||||||||||||||| | |||| ||||    
T  11197775 tgagtattgcaagaaacatgttaatgctaaaagttatgatgggcttaggaattgggacgctgaattcgtcca-gttgatcaagatactatgttcagtctc 11197677  T
Q  354 atctcggctgctaactattt 373  Q
    |||||| || ||||||||||    
T  11197676 atctcgacttctaactattt 11197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 11160539 - 11160690
Alignment:
Q  122 cgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatccctatttcg 221  Q
    ||||||||| ||||| ||| ||| ||||||| |  |||| || |||||||||| |||||| || ||| | |||||| |||||| |||||||||| || |     
T  11160539 cgagaccttcgaaattgaaaaggcggtggcattagaatctcaaacgatcaagcatttgatcgatgacaattgtgccgacgacagtggaatccctcttcca 11160638  T
Q  222 aacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    ||||| ||| ||||||||||||| |||||||||||  |||||||||| ||||    
T  11160639 aacgttaccggcaagatcttggctatggttattgagcattgcaagaagcatg 11160690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 388
Target Start/End: Original strand, 11174532 - 11174844
Alignment:
Q  91 cgaagaagatcatccttaagagttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacga 190  Q
    |||||||||||| ||| ||||||||||| || || |||||||| || |||||||  |||||| |  |||| || || ||||||| |||||| || || |     
T  11174532 cgaagaagatcaccctcaagagttatgacggtgaaacctttgatatcgaagaggcagtggcattagaatctcaaactatcaagcatttgatcgatgatgt 11174631  T
Q  191 gtgtgccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatgctgatgatgtaagttct 290  Q
     |   || |||||||||||||||||||| |||| |||||  ||||||||||||| | |||||| || |||||||||||||||| |||  ||| ||| ||     
T  11174632 tt---ccgacgacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaatatgcaagatcc 11174728  T
Q  291 ------------------gatgagcttaggaagtgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatt 372  Q
                      ||||| |||| |||||||||  |||| || ||||||||||||||||| || |||||| ||||||||| ||||||||||||||    
T  11174729 aatgaaaaaccaccggaggatgaacttaagaagtgggatgctgaattcgtccaggttgatcaagaaaccctcttcgatctcatcttggctgctaactatt 11174828  T
Q  373 taaacatcaaaagtct 388  Q
    | |||||||| |||||    
T  11174829 tgaacatcaagagtct 11174844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 11160741 - 11160824
Alignment:
Q  306 tgggacactgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatttaaacatcaaaagtctg 389  Q
    ||||||||||| || ||| ||||||| |||||||| |||||| ||||||||| |||||| |||||| |||||||||||||||||    
T  11160741 tgggacactgaattcgtcaaggttgaccaagataccctcttcgatctcatcttggctgcaaactatctaaacatcaaaagtctg 11160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 5646597 - 5646671
Alignment:
Q  199 acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    ||||||||||||||||||| || |||||||||||| ||||  |||| ||||| ||||| ||||||||||||||||    
T  5646597 acgacactggaatccctatctcaaacgtaaccagcgagattctggctatggtaattgagtattgcaagaaacatg 5646671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 11182099 - 11182173
Alignment:
Q  199 acgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    |||||||||||||||||||| |||| |||||  ||||||||||||| | |||||| || ||||||||||||||||    
T  11182099 acgacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatg 11182173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 11240934 - 11240855
Alignment:
Q  133 aaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgtgccaacgacactggaatc 212  Q
    |||| ||||||||||||||  || ||||||| || ||||||| |||||| || |||||||||| |||||||| |||||||    
T  11240934 aaattgaagaggtggtggctttggaatcccatactatcaagcatttgattgatgacgagtgtgtcaacgacattggaatc 11240855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 11179571 - 11179541
Alignment:
Q  17 cactcacgcctattcttttcaaactcagaga 47  Q
    |||||||||||||||||||||||||||||||    
T  11179571 cactcacgcctattcttttcaaactcagaga 11179541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 11932095 - 11932023
Alignment:
Q  201 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    |||||| |||||||||||||  | |||||| | | ||||||||| | ||||||||| ||||||||||| ||||    
T  11932095 gacactagaatccctatttctgaggtaaccgggaggatcttggcgaaggttattgagtattgcaagaagcatg 11932023  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 36687116 - 36686949
Alignment:
Q  95 gaagatcatccttaagagttatgagggcgagacctttgaaatagaagaggtggtggcagtgcaatcccagacgatcaagcttttgatagacgacgagtgt 194  Q
    |||||||| ||| |||||||  || || |||||||||||||| || ||||  |||||| || |||| || |||||||| ||||| || || || || |||    
T  36687116 gaagatcaccctgaagagttccgacggggagacctttgaaatcgacgaggcagtggcattggaatcacaaacgatcaaacttttaatcgaggatgattgt 36687017  T
Q  195 gccaacgacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattg 262  Q
    | | || | | |||||||||| |||| || ||||| ||||| |||||||| | |||||||||||||||    
T  36687016 gtcgactatagtggaatccctctttcaaatgtaactagcaacatcttggcaaaggttattgaatattg 36686949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 36686875 - 36686811
Alignment:
Q  318 tttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaactatttaaacatcaa 382  Q
    |||||| |||||||||||||||| ||| || |||| ||||||||||| |||||||| ||||||||    
T  36686875 tttgtcaaggttgatcaagatacactcctcgatctgatctcggctgcaaactatttgaacatcaa 36686811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 8991411 - 8991483
Alignment:
Q  201 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    |||| |||||||||| || | ||||| ||||||||||||||||| | ||| ||||| ||||||||||| ||||    
T  8991411 gacagtggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagcatg 8991483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 8981906 - 8981978
Alignment:
Q  201 gacactggaatccctatttcgaacgtaaccagcaagatcttggccatggttattgaatattgcaagaaacatg 273  Q
    |||| |||||||||| || | ||||| ||||| ||||||||||| | ||| ||||| ||||||||||| ||||    
T  8981906 gacagtggaatccctcttcccaacgttaccagtaagatcttggcgaaggtgattgagtattgcaagaagcatg 8981978  T

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