View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_24 (Length: 397)
Name: NF15324_low_24
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 50984314 - 50984123
Alignment:
| Q |
16 |
aatgttttagattggtaggtgttgatactagaaccaacagcaattaaaatcagatataaatggggagttagacaatttgcttttgtcaggtagtatatat |
115 |
Q |
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| T |
50984314 |
aatgttttagattggtaggtgttgatactagcagcagcagccattaaaatctgatataaatggggagttagacaatttgcttttgtcaggtagtatatat |
50984215 |
T |
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| Q |
116 |
atggatgtaggagccctcgaataccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
207 |
Q |
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| T |
50984214 |
atggatgtaggagccctcgaataccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
50984123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 51087448 - 51087257
Alignment:
| Q |
16 |
aatgttttagattggtaggtgttgatactagaaccaacagcaattaaaatcagatataaatggggagttagacaatttgcttttgtcaggtagtatatat |
115 |
Q |
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| T |
51087448 |
aatgttttagattggtaggtgttgatactagcagcagcagccattaaaatctgatataaatggggagttagacaatttgcttttgtcaggtagtatatat |
51087349 |
T |
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| Q |
116 |
atggatgtaggagccctcgaataccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
207 |
Q |
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| T |
51087348 |
atggatgtaggagccctcgaataccaattatgtacaagctcatcatttgtaatgtcttctgtacattcaaaaaatatctataaatactggaa |
51087257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 205 - 384
Target Start/End: Complemental strand, 50984091 - 50983912
Alignment:
| Q |
205 |
gaatctaaagggaatggaacaaaaaggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaacaaag |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50984091 |
gaatctaaagggaatggaacaaaacggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaataaag |
50983992 |
T |
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| Q |
305 |
cacacaatcaagaacaaaatatgcagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcatttc |
384 |
Q |
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| T |
50983991 |
cacacaatcaagaacaaaatatacagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcatttc |
50983912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 205 - 384
Target Start/End: Complemental strand, 51087225 - 51087046
Alignment:
| Q |
205 |
gaatctaaagggaatggaacaaaaaggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaacaaag |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51087225 |
gaatctaaagggaatggaacaaaacggaacatttcccccttacccttatattttttatgctttcatttctttattaaaaggcaaaatggaataaataaag |
51087126 |
T |
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| Q |
305 |
cacacaatcaagaacaaaatatgcagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcatttc |
384 |
Q |
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| T |
51087125 |
cacacaatcaagaacaaaatatacagggaaaacgaagtcaaacatgacacaaaacaaaatcacttgcagatattcatttc |
51087046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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