View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_25 (Length: 395)
Name: NF15324_low_25
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 21159574 - 21159213
Alignment:
| Q |
15 |
tctatcaaaggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21159574 |
tctatcaaaggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatg |
21159475 |
T |
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| Q |
115 |
gtttttgtcgcaaaggtgaaactcacaaatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21159474 |
gtttttgtcgcaaaggtgaaactcacaaatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattat |
21159375 |
T |
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| Q |
215 |
tctaatcactggattatgtcggataggagaaactcaatcagccatccagttgttgagaaaggctttacagattgagattgacagggaaaatggttatggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21159374 |
tctaatcactggattatgtcggataggagaaactcaatcagccatccagttgttgagaaaggctttacagattgagattgacagggaaaatggttatggt |
21159275 |
T |
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| Q |
315 |
tttactgtcacgttctgttataatacagtcatattcaggctagcctgcaaagatagacttat |
376 |
Q |
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| T |
21159274 |
tttactgtcacgttctgttataatacagtcatattcaggctagcctgcaaagatagacttat |
21159213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 182 - 376
Target Start/End: Original strand, 28326139 - 28326333
Alignment:
| Q |
182 |
tggtttttagttgaaccatgatagttatattattctaatcactggattatgtcggataggagaaactcaatcagccatccagttgttgagaaaggcttta |
281 |
Q |
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| T |
28326139 |
tggttttaagtggaactatcatagttatcttattctaatcactggattatgtcggataggagaaactcaatcagccatccagttgttgagaaaggcttta |
28326238 |
T |
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| Q |
282 |
cagattgagattgacagggaaaatggttatggttttactgtcacgttctgttataatacagtcatattcaggctagcctgcaaagatagacttat |
376 |
Q |
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| T |
28326239 |
cagattgagattgacacggaaagtcttcatgcttttactgtcatgcgctgttataacacaatcatattcaggctagcttgcaaagatagacttat |
28326333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 47568826 - 47569078
Alignment:
| Q |
22 |
aaggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatggtttttg |
121 |
Q |
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||||||| |||||||| | |||||| ||||| ||| |||||| |||||||| || |||||| ||| |||||||||||| |||| | | ||||||||| |
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| T |
47568826 |
aaggtaaaatgtcttcagatatctctttattccataaaatcatcgacaccggtgataatcctactacacaaactttgaatcatcttttagttggtttttg |
47568925 |
T |
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| Q |
122 |
tcgcaaaggtgaaactcacaaatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattattctaatc |
221 |
Q |
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||||| | | | ||| ||||| ||||||| |||||||||||||||||| | | ||| ||| ||| ||||||||||||||||||| ||||||| ||| |
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| T |
47568926 |
tcgcagacgacagactgacaaagcaatgctgttttacaatgacatcatacttaaaaacggt---tttctgttgaaccatgatagttatcttattctgatc |
47569022 |
T |
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| Q |
222 |
actggattatgtcggataggagaaactcaatcagccatccagttgttgagaaaggc |
277 |
Q |
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| T |
47569023 |
aatggattatgtgagataggagaaactcaattagccatcaatatgttgagacaggc |
47569078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 277
Target Start/End: Original strand, 28231190 - 28231421
Alignment:
| Q |
43 |
tctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttct-cgatggtttttgtcgcaaaggtgaaactcaca |
141 |
Q |
| |
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||||||||||| ||| |||||| |||||||| ||||||||| ||| ||| |||||||| |||||| ||| |||||| || |||| ||| | ||| | |
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| T |
28231190 |
tctctctattcaataaaatcatcgacaccggttatcatcctactacacaaaatttgaatcatcttctacga-ggttttcgtgacaaacatgagattcata |
28231288 |
T |
|
| Q |
142 |
aatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattattctaatcactggattatgtcggatagg |
241 |
Q |
| |
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| || ||||||||||||||| |||||| | | ||| ||| ||| |||||||| |||| |||||| |||||||| || |||||||||| |||||| |
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| T |
28231289 |
atgcattgctcttttacaatggtatcatacttaaaaagggt---tttcagttgaacgatgaaagttattatattctaagcaatggattatgtgagatagg |
28231385 |
T |
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| Q |
242 |
agaaactcaatcagccatccagttgttgagaaaggc |
277 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||| |
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| T |
28231386 |
agaaactcaaacagcaatccagttgttgagaaaggc |
28231421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 6327166 - 6327023
Alignment:
| Q |
24 |
ggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatggtttttgtc |
123 |
Q |
| |
|
|||||||||||||| || |||| | ||||| ||||||||| || || ||| ||| |||| | ||||||||||| || | || ||||||||||||| | |
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| T |
6327166 |
ggtaacatgtcttcggctatctgtttattcaataatatcataaaaactggtcatcctccttcttctgaaactttgtatgatattttcgatggtttttgcc |
6327067 |
T |
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| Q |
124 |
gcaaaggtgaaactcacaaatcaatgctcttttacaatgacatc |
167 |
Q |
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| T |
6327066 |
gcataggcaagattcacaaagcaatcctcttttataatgacatc |
6327023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 28238753 - 28238997
Alignment:
| Q |
24 |
ggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatggtttttgtc |
123 |
Q |
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|||||||||||||| || |||||||| ||| ||| |||||| |||||||| ||||||||| | ||| |||||| || |||| | ||||||||||| |
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| T |
28238753 |
ggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgctggtactttgtattctcttttatatggtttttgtg |
28238852 |
T |
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| Q |
124 |
gcaaaggtgaaactcacaaatcaatgctcttttacaatgacatcataataataaatggtggtttttagttgaaccatgatagttatattattctaatcac |
223 |
Q |
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| | | | | |||||| |||||| |||||||||| |||||||| | | ||| |||||| ||||| ||||| | ||||| || ||||||||| |
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| T |
28238853 |
atagacatcagattcacaaggcaatgcacttttacaattacatcatacttaaaaa---gggttttcagttggaccataagtgttatcttgttctaatcaa |
28238949 |
T |
|
| Q |
224 |
tggattatgtcggataggagaaactcaatcagccatccagttgttgag |
271 |
Q |
| |
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||||||||| |||||||||||| || |||| || ||||||||||| |
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| T |
28238950 |
aggattatgtaagataggagaaacgcacacagcaatacagttgttgag |
28238997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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