View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_29 (Length: 381)

Name: NF15324_low_29
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_29
NF15324_low_29
[»] chr7 (3 HSPs)
chr7 (1-295)||(35052966-35053260)
chr7 (256-308)||(35052922-35052974)
chr7 (316-363)||(35052693-35052740)
[»] chr3 (2 HSPs)
chr3 (1-308)||(53322179-53322496)
chr3 (316-363)||(53322774-53322821)
[»] chr5 (4 HSPs)
chr5 (1-287)||(12798672-12798951)
chr5 (1-287)||(12735845-12736124)
chr5 (316-363)||(12735493-12735540)
chr5 (316-363)||(12798320-12798367)
[»] chr1 (1 HSPs)
chr1 (1-287)||(14124606-14124881)
[»] chr4 (1 HSPs)
chr4 (1-287)||(20005484-20005759)
[»] chr2 (6 HSPs)
chr2 (206-308)||(40077083-40077185)
chr2 (222-308)||(40059071-40059157)
chr2 (222-308)||(40085009-40085095)
chr2 (316-363)||(40059800-40059847)
chr2 (316-363)||(40077880-40077927)
chr2 (316-363)||(40085685-40085732)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35053260 - 35052966
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaagatgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35053260 aagggttataatttttctcaatccaaactcatctttctcaattcaagatgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttattc 35053161  T
Q  101 tattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctcttttgattttctatgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35053160 tattgcaattactacatacaaaagtttgattatggatatcttgttctatttactaccttcttagtactccatcggtttctctcttttgattttctatgta 35053061  T
Q  201 ttttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35053060 ttttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgtcgttggttatagatgtggccaaaccttattcaaaaatttatagatg 35052966  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 35052974 - 35052922
Alignment:
Q  256 ttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35052974 ttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt 35052922  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 35052740 - 35052693
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35052740 cttcttaacagtggttaacctctttggattcacttcattccagggatt 35052693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 53322179 - 53322496
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||||||    
T  53322179 aagggttataatttttctcaatccaaactcatctttctcaattcaagaatggaattgatgaagggaaaattttaaggtttgcttaaaatccacgtttatt 53322278  T
Q  100 ctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct---------tttgat 190  Q
    |||||||||||||||||||||||| ||||| ||| ||| |||| ||||||| ||||||||| ||||||||||||||| |||||||         | ||||    
T  53322279 ctattgcaattactacatacaaaaatttgagtattgatttcttgttctattcactaccttcctagtactccatcggtctctctctctctctctctctgat 53322378  T
Q  191 tttctatgtattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttat 290  Q
    ||||||||| |||||||||||| ||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  53322379 tttctatgtgttttctgagtttttgcattgtatttgattttaaacggtgttgaatttgttgttggttatagatgtggccaaacctcattcaaaaatatat 53322478  T
Q  291 agatggaggactttatgt 308  Q
    |||||||||| |||||||    
T  53322479 agatggaggattttatgt 53322496  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 53322774 - 53322821
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    |||||||| | ||||||||||||||| |||||||||||||||||||||    
T  53322774 cttcttaagattggttaacctctttgtattcacttcattccagggatt 53322821  T

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Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 12798951 - 12798672
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12798951 aagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgatgaaggaaaaattttaaggtttgcttaaattccacttttatt 12798852  T
Q  100 ctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct-tttgattttctatg 198  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| |         ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  12798851 ctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcggtttctctctctttgattttctatg 12798761  T
Q  199 tattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatt 287  Q
    |||||||||||||| ||||||||  |||||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12798760 tattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaatt 12798672  T

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Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 12736124 - 12735845
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12736124 aagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgatgaaggaaaaattttaaggtttgcttaaattccacttttatt 12736025  T
Q  100 ctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct-tttgattttctatg 198  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| |         ||||||| |||| |||||||||||||||||| ||||||||||||||    
T  12736024 ctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtgctccatcggtttctctctctttgattttctatg 12735934  T
Q  199 tattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatt 287  Q
    |||||||||||||| ||||||||  |||||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12735933 tattttctgagtttttgcattgtatttgattctaaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaatt 12735845  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 12735540 - 12735493
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  12735540 cttcttaagagtggttaacctctttggattcacttcattccagggatt 12735493  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 12798367 - 12798320
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  12798367 cttcttaagagtggttaacctctttggattcacttcattccagggatt 12798320  T

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Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 14124881 - 14124606
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    |||||||||||||||||| |||||||||||||||    
T  14124881 aagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgaggaa----aaattttaaggtttgcttaaattccacttttatt 14124786  T
Q  100 ctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct-tttgattttctatg 198  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| |         ||||||| |||||||||||| |||||||||| ||||||||| |||     
T  14124785 ctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcagtttctctctctttgattttttata 14124695  T
Q  199 tattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatt 287  Q
    |||||||||||||| ||||||||  |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14124694 tattttctgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaatt 14124606  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 20005484 - 20005759
Alignment:
Q  1 aagggttataatttttctcaatccaaactcatctttctcaattcaaga-tgaaattgatgaagggaaaattttaaggtttgcttcaattccacttttatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    |||||||||||||||||| |||||||||||||||    
T  20005484 aagggttataatttttctcaatccaaactcatctttctcaattcaagaatgaaattgaggaa----aaattttaaggtttgcttaaattccacttttatt 20005579  T
Q  100 ctattgcaattactacatacaaaagtttgattatggatatctttttctatttactaccttcttagtactccatcggtttctctct-tttgattttctatg 198  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||| |         ||||||| |||||||||||| |||||||||| ||||||||| |||     
T  20005580 ctatttcaattactacatacaaaagtttgagtattgatttcttgt---------taccttcctagtactccatcagtttctctctctttgattttttata 20005670  T
Q  199 tattttctgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatt 287  Q
    |||||| ||||||| ||||||||  |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20005671 tattttttgagtttttgcattgtatttgattctaaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaatt 20005759  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 40077083 - 40077185
Alignment:
Q  206 tgagtttgtgcattgttgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggacttta 305  Q
    ||||||| ||||||||  |||||||||||  ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| |    
T  40077083 tgagtttttgcattgtatttgattttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttga 40077182  T
Q  306 tgt 308  Q
    |||    
T  40077183 tgt 40077185  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 40059071 - 40059157
Alignment:
Q  222 tgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt 308  Q
    |||||| ||||||  ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| ||||    
T  40059071 tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgt 40059157  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 40085009 - 40085095
Alignment:
Q  222 tgttgattttaaaaggtgttgaatttgttgttggttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgt 308  Q
    |||||| ||||||  ||| |||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||| ||||    
T  40085009 tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgt 40085095  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 40059800 - 40059847
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    ||||||||||||||||  ||||||||| ||||||||||||| ||||||    
T  40059800 cttcttaacagtggtttccctctttggcttcacttcattccggggatt 40059847  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 40077880 - 40077927
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    |||||| |||||||||  ||||||||| ||||||||||||||||||||    
T  40077880 cttcttgacagtggtttccctctttggcttcacttcattccagggatt 40077927  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 40085685 - 40085732
Alignment:
Q  316 cttcttaacagtggttaacctctttggattcacttcattccagggatt 363  Q
    |||||| |||||||||  ||||||||| ||||||||||||||||||||    
T  40085685 cttcttgacagtggtttccctctttggcttcacttcattccagggatt 40085732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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