View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_3 (Length: 664)
Name: NF15324_low_3
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 20 - 646
Target Start/End: Complemental strand, 31063381 - 31062761
Alignment:
| Q |
20 |
gaatggtaaaagttggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattatcaatgctttgaatttgtgtgcttat |
119 |
Q |
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| T |
31063381 |
gaatggtaaaagttggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattatcaatgctttgaatttgtgtgcttat |
31063282 |
T |
|
| Q |
120 |
ctcttcttagcaaagaggtatacttataagagtgttcagaggataggtaatgaaattgatgccggtaagagtgatgatggggtagagataatggcatgat |
219 |
Q |
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| T |
31063281 |
ctcttcttagcaaagaggtatacttataagagtgttcagaggataggtaatgaaattgatgccggtaagagtgatgatggggtagacatgatggcatgat |
31063182 |
T |
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| Q |
220 |
gagagctacaatggtttgatctcgcatttatatttttctgctgaatcaagtgtcttacattgtttcgccaagtttacatttgttgtatattacctaatgt |
319 |
Q |
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| T |
31063181 |
gagagctacaatggtttgatctcgcatttatatttttttgctgaatcaagtgtcttacattgtttcgccaagtttacatttgttgtatattacctaatgt |
31063082 |
T |
|
| Q |
320 |
atggcttgctaaaattagatccaaggatataatgtgagtgataagtatatactttatgcttttcaagagattttattctgatgagtagttttgagaatgt |
419 |
Q |
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| T |
31063081 |
atggcttgctaaaattagatccaaggatataa------tgataagtatatactttatgcttttcaagagattttattctgatgagtagttttgagaatgt |
31062988 |
T |
|
| Q |
420 |
agattatgtttgagtgcaatcttttgatccttgcagtactgaatagttgagtatttaaagatgagggaattttagaatcttggagagcaagttagaaata |
519 |
Q |
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| T |
31062987 |
agattatgtttgagtgcaatcttttgatccttgcagtactgaatagttgagtatttaaagatgagggaattttagaatcttggagagcaagttagaaata |
31062888 |
T |
|
| Q |
520 |
tagtccttacgttgctttcttttgtggtgaattcagaatcttgagagccaaggaatgatgttgctttttctatggtttttattttacagtctttgagaac |
619 |
Q |
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| T |
31062887 |
tagtcgttacgttggtttcttttgtggtgaattcagaatcttgagagccaaggaatgatgttgctttttctatggtttttattttacagtctttgagaac |
31062788 |
T |
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| Q |
620 |
aagtaacttctattctgatgccggatc |
646 |
Q |
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| T |
31062787 |
aagtaacttctattctgatgccggatc |
31062761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 31074791 - 31074588
Alignment:
| Q |
20 |
gaatggtaaaagttggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattatcaatgctttgaatttgtgtgcttat |
119 |
Q |
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| T |
31074791 |
gaatggtaaaagttggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattattaatgctttgaatttgtgtgcttat |
31074692 |
T |
|
| Q |
120 |
ctcttcttagcaaagaggtatacttataagagtgttcagaggataggtaatgaaattgatgccggtaagagtgatgatggggtagagataatggcatgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||| |
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| T |
31074691 |
ctcttcttagcaaagaggtatacttataagagtgttcagaagataggtaatgaaactgatggttgtaagagtgatga---ggtagagatgatggcatgat |
31074595 |
T |
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| Q |
220 |
gagagct |
226 |
Q |
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| T |
31074594 |
gagagct |
31074588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 31057292 - 31057169
Alignment:
| Q |
27 |
aaaagttggattgggaaggatataaattcaagtcgtttggataggttttattggatgttggcaattatcaatgctttgaatttgtgtgcttatctcttct |
126 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| | | |||||||| |||| | | |||| || |
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| T |
31057292 |
aaaagttggattgggaaggatataaattcgagtcgtttggataacttttattggatgttggcagctattagttctttgaatgtgtgcgtgtttctcgtca |
31057193 |
T |
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| Q |
127 |
tagcaaagaggtatacttataaga |
150 |
Q |
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|| ||||||||||||||||||||| |
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| T |
31057192 |
tatcaaagaggtatacttataaga |
31057169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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