View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_30 (Length: 375)
Name: NF15324_low_30
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 15344527 - 15344867
Alignment:
| Q |
11 |
cacagatggaagcaacaaatattttgaagaaaacttggttaaggcctgctcctccaaagctagcaagcagcaaaagaaacaaaagagtcctaggcagaaa |
110 |
Q |
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| T |
15344527 |
cacagatggaagcaacaaatattttgaagaaaacttggttaaggcctgctcctccaaagctagcaagcagcaaaagaaacaaaagagtcctaggcagaaa |
15344626 |
T |
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| Q |
111 |
aaggacaatagtaaggaagggatgaagacacgtttcaaaaaacatgttctttcccatagctctgcataagactgatgcatatccacgttctcatcacaat |
210 |
Q |
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| T |
15344627 |
caggacaatagtaaggaagggatcaagacacgtttcaaaacacatgttctttcccatagctctgcataagactgatgcatatccacattctcatcacaat |
15344726 |
T |
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| Q |
211 |
gtgggaataaccctccatcttttattcttcatttgtttcttatagatggttctggtttgccttattataggttgtaatgtgataacttttgtcaagggtt |
310 |
Q |
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| T |
15344727 |
gggggaataaccctccatcttttattcttcatttgtttcttatagatggttctggtctgccttattataggttgtaatgtgataacttttgacaagggtt |
15344826 |
T |
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| Q |
311 |
caggcccaatcctgtcagtttaatgcttttcattgcttgat |
351 |
Q |
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| T |
15344827 |
caggcccaatcctgtcagtttaatgcttttcattgcttgat |
15344867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 31045708 - 31045755
Alignment:
| Q |
304 |
aagggttcaggcccaatcctgtcagtttaatgcttttcattgcttgat |
351 |
Q |
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| T |
31045708 |
aagggttgaggcccaatcctgttagtttaatgcttttcattgcttgat |
31045755 |
T |
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