View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_31 (Length: 374)
Name: NF15324_low_31
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 19387378 - 19387681
Alignment:
| Q |
25 |
gataacgatgaagcattattagatctagcagaccttcaaaatccaatgannnnnnnnnn-----ataaaaatattcaatggttaatattaaaaaattaat |
119 |
Q |
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| T |
19387378 |
gataacgatgaagcattattagatctagcagaccttcaaaatccaatgatttatttttttttttataaaaatattcaatggttaatattaaaaaattaat |
19387477 |
T |
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| Q |
120 |
gaatttttgtgtgtagcatttaaaatattgatccaccttagacatttgagctttaaagttaatatttcaaataaagccattttgtttaaatacatcatca |
219 |
Q |
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| T |
19387478 |
gaatttttgtgtgtagcatttaaaatattgatccaccttagacatttgagctttaaagttaatatttcaaataaagccattttgtttaaatacatcatca |
19387577 |
T |
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| Q |
220 |
gatagtccttttttataccatggtacatatgaaaaaagttaccaattcatttgccaatgaaattgtagagaaaactaaaagaaaactgagtatttcattt |
319 |
Q |
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| T |
19387578 |
gatagtccttttttataccatggtacatatgaaaaaagttaccaattcatttgccaatgaaattgtagagaaaactaaaagaaaactgagtatttcattt |
19387677 |
T |
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| Q |
320 |
tgtt |
323 |
Q |
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|||| |
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| T |
19387678 |
tgtt |
19387681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 374
Target Start/End: Original strand, 19387697 - 19387731
Alignment:
| Q |
340 |
ctgagtatctcattctaattaatcaactgaatatc |
374 |
Q |
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| T |
19387697 |
ctgagtatctcattctaattaatcaactgaatatc |
19387731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 19433103 - 19433144
Alignment:
| Q |
32 |
atgaagcattattagatctagcagaccttcaaaatccaatga |
73 |
Q |
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| T |
19433103 |
atgaagcattattagatctagtagagcttcaaaatccaatga |
19433144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 19433159 - 19433325
Alignment:
| Q |
86 |
aaaaatattcaatggttaatattaaaaaattaatgaa----tttttgtgtgtagcatttaaaatattgatccaccttagacatttgagctttaaa-gtta |
180 |
Q |
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|||||| |||||||| |||||||||||| |||||||| ||| | | || | || |||||||||| | || ||||||||||||| || ||| |||| |
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| T |
19433159 |
aaaaatgttcaatggataatattaaaaacttaatgaagtcttttatatatggaccacctaaaatattggttcagtttagacatttgaggttaaaaagtta |
19433258 |
T |
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| Q |
181 |
atatttcaaataaagccattttgtttaaatacatcatcagatagtccttttttataccatggtacat |
247 |
Q |
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| T |
19433259 |
atcttctaagtagagccattttgtttaaatgcattttcaaacagtccttttttatagcatggtacat |
19433325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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