View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_32 (Length: 365)
Name: NF15324_low_32
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 28182303 - 28182556
Alignment:
| Q |
9 |
gcagagattacaacttgcattgaacgtttgagtttcaaaatatcttcaccggaaattgaacaacctatatccaccaccgtgacaagatccaccggcggcc |
108 |
Q |
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| T |
28182303 |
gcagagattacaacttgcattgaacgtttgagtttcaaaatatcttcaccggaaattgaacaacctatatccaccaccgtgacaagatccaccggcggcc |
28182402 |
T |
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| Q |
109 |
gatttaccaccgcattatacggctttgccttcacctttaacactgcaattaacgtctcgaagctcttgttagatgctactagagcagtttctggtagaaa |
208 |
Q |
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| T |
28182403 |
gatttaccaccgcattatacggctttgccttcacctttaacactgcaattaacgtctcgaagctcttgttagatgctactagagcagtttctggtagaaa |
28182502 |
T |
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| Q |
209 |
aaacgcttcaaatgtttttgttgaagaaacatctaagccttgaaattcaacagg |
262 |
Q |
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| T |
28182503 |
aaacgcttcaaatgtttttgttgaagaaacatctaagccttgaaattcaacagg |
28182556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 28182608 - 28182641
Alignment:
| Q |
314 |
gggtatggtgctgaagcgagaaacggaggcagag |
347 |
Q |
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| T |
28182608 |
gggtatggtgctgaagcgagaaacggaggcagag |
28182641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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