View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15324_low_39 (Length: 307)
Name: NF15324_low_39
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 27833051 - 27832773
Alignment:
| Q |
20 |
ctccaccaccactcacaccaatgtcaccatggtaacctgcaccaatgcgatgatctacaccaaaggtgaggagtgttctagcagcagagcaaatgccgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27833051 |
ctccaccaccactcacaccaatgtcaccatggtaacctgcaccaatgcgatgatctacaccaaaggtgaggagtgttctagcagcagagcaaatgccgaa |
27832952 |
T |
|
| Q |
120 |
acctaacaacacaaagaacaaaatactaagaacttttgaagttgccattgggaagtgtttgatatcccacaactgaggtttcactatccttaagatggct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832951 |
acctaacaacacaaagaacaaaatactaagaactttcgaagttgccattgggaagtgtttgatatcccacaactgaggtttcactatccttaagatggct |
27832852 |
T |
|
| Q |
220 |
atttataggaattcagttggaccaataagagtgcaaaagctcgtttaattggtcctgtcccatgtagtagaagtataat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27832851 |
atttataggaattcagttggaccaataagagtgcaaaagctcgtttaattggtcctgtcccatgtagtagaagtataat |
27832773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 27838631 - 27838483
Alignment:
| Q |
20 |
ctccaccaccactcacaccaatgtcaccatggtaacctgcaccaatgcgatgatctacaccaaaggtgaggagtgttctagcagcagagcaaatgccgaa |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
27838631 |
ctccacctccactcacaccaatgtcaccatggaaacctgcaccaatgccatgatctacaccaaaggtgaggagtgttctagcggcagagcaaataccgaa |
27838532 |
T |
|
| Q |
120 |
acctaacaacacaaagaacaaaatactaagaacttttgaagttgccatt |
168 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||| ||| |||| |
|
|
| T |
27838531 |
acctaacaacacaaagaaaaaaataccaagaactttcgaaattgtcatt |
27838483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University