View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_42 (Length: 304)
Name: NF15324_low_42
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 55206 - 54908
Alignment:
| Q |
1 |
ctgtgctgaaatcttcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctttacac |
100 |
Q |
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| T |
55206 |
ctgtgctgaaatcttcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctttacac |
55107 |
T |
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| Q |
101 |
acgttacattgcagggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggttgcacatatgatgcagttcacaat |
200 |
Q |
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| T |
55106 |
acgttacattgcagggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggttgcacatatgatgcagttcacaat |
55007 |
T |
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| Q |
201 |
taaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaagttagcaagtaacttgggtctgtg |
299 |
Q |
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| T |
55006 |
taaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaagttagcaagtaacttgggtttgtg |
54908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 33754670 - 33754515
Alignment:
| Q |
15 |
tcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctttacacacgttacattgcag |
114 |
Q |
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| T |
33754670 |
tcttagctacatgaagctccctcaatttacttaacacagaagaatggagagcaccttgaagtccggtgcgctc--agtctttgcacacattacattgcag |
33754573 |
T |
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| Q |
115 |
ggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggt |
176 |
Q |
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| T |
33754572 |
ggttgcattagta----tttttcatgattttcagaaacacggaatttattaggtaatgtggt |
33754515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 33754468 - 33754378
Alignment:
| Q |
185 |
tgatgcagttcacaattaaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaa |
275 |
Q |
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| T |
33754468 |
tgatgcagttcacaattaaaaagtatgattcaggcatatgtatgttcatagttcatacctgatagcatgattttgattgttaggtcatcaa |
33754378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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