View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_43 (Length: 298)
Name: NF15324_low_43
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_43 |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 16347 - 16067
Alignment:
| Q |
1 |
gggaagaggaagagttttagcatcaagttttttccaagagttagacttaagactgtataactcagctgtccaaaaacctttttgtctatcatctgtttcc |
100 |
Q |
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| T |
16347 |
gggaagaggaagagttttagcatcaagttttctccaagagttagacttatgactgtataactcagctgtccaaaaacctttttgtctatcatctgtttcc |
16248 |
T |
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| Q |
101 |
tttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaagagaataaataccatttgaat |
200 |
Q |
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| T |
16247 |
tttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaagagaataaataccatttgaat |
16148 |
T |
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| Q |
201 |
ctgtcaaatgggataaaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaagt |
281 |
Q |
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| T |
16147 |
ctgtcaaatgggattcaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaagt |
16067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 21087884 - 21087604
Alignment:
| Q |
1 |
gggaagaggaagagttttagcatcaagttttttccaagagttagacttaagactgtataactcagctgtccaaaaacctttttgtctatcatctgtttcc |
100 |
Q |
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|||||||||||| |||| ||||||||| |||||||||||||| || |||||||| ||||||||| |||||||| | ||||||||||| |||||||||||| |
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| T |
21087884 |
gggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataccctttttgtctttcatctgtttcc |
21087785 |
T |
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| Q |
101 |
tttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaagagaataaataccatttgaat |
200 |
Q |
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| T |
21087784 |
tttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgagagaataaatgccatttgaat |
21087685 |
T |
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| Q |
201 |
ctgtcaaatgggataaaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaagt |
281 |
Q |
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|||| ||||||||| |||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
21087684 |
ctgttaaatgggattcaggtaaagccttgaactgttgtaaagaagcattcatcaagacatttggatttccttgaagtaagt |
21087604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 55828 - 55570
Alignment:
| Q |
23 |
tcaagttttttccaagagttagacttaagactgtataactcagctgtccaaaaacctttttgtctatcatctgtttcctttaaccaaatatctttgagca |
122 |
Q |
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||||| ||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| |||||| ||| | |||| |
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| T |
55828 |
tcaagctttctccaagagttagaattaagactatataactcagctgtccaatgccctttttgtctttcatctgttttctttagccaaatgtctcttagca |
55729 |
T |
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| Q |
123 |
taacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaagagaataaataccatttgaatctgtcaaatgggataaaggtaa |
222 |
Q |
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||||||||||||||||||| |||| || || | ||||| | |||| ||||||| ||||||||| | |||| ||||||||||||| ||| ||| || |
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| T |
55728 |
caacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagtgagagaataattgagatttaaatctgtcaaatgagattcaggcaa |
55629 |
T |
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| Q |
223 |
agacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaagt |
281 |
Q |
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|| |||||||||||| | |||||||||||||| || |||||||||||||||||| |||| |
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| T |
55628 |
agccttgaactgtctcaaagaagggttcatcatgagatttggatttccttgaagaaagt |
55570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 26813407 - 26813346
Alignment:
| Q |
104 |
aaccaaatatctttgagcataacaactttatagtcattactttt-gggatcaaaaccaaaac |
164 |
Q |
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|||||||||||| | |||| ||||| ||||||||||||| |||| ||| ||||||||||||| |
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| T |
26813407 |
aaccaaatatctctaagcacaacaagtttatagtcattagttttgggggtcaaaaccaaaac |
26813346 |
T |
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