View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_44 (Length: 295)

Name: NF15324_low_44
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_44
NF15324_low_44
[»] chr2 (2 HSPs)
chr2 (161-237)||(11846050-11846126)
chr2 (52-121)||(11846166-11846235)
[»] chr3 (2 HSPs)
chr3 (161-236)||(14868546-14868621)
chr3 (53-93)||(14862332-14862372)
[»] chr8 (1 HSPs)
chr8 (13-45)||(34232129-34232161)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 11846126 - 11846050
Alignment:
Q  161 agtttcatcaaacggcttaaaacactgtcgtacatatttgtgcttcttaatttgtcgtgctatcaagtatttctcaa 237  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11846126 agtttcatcaaacggcttaaaacactgtcgtacatattcgtgcttcttaatttgtcgtgctatcaagtatttctcaa 11846050  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 11846235 - 11846166
Alignment:
Q  52 aagagaagtgctatataagacgagttcttagcatacgacacacacgacacaacaatcatgcggaagggag 121  Q
    |||||||||| ||||||| |||||| ||||||| ||||||||||| ||| | ||||||||||||||||||    
T  11846235 aagagaagtgttatataacacgagtccttagcacacgacacacacaacatagcaatcatgcggaagggag 11846166  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 14868546 - 14868621
Alignment:
Q  161 agtttcatcaaacggcttaaaacactgtcgtacatatttgtgcttcttaatttgtcgtgctatcaagtatttctca 236  Q
    |||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  14868546 agtttcatcaaacggcttaaaacattgtcgaatatattcgtgcttcttaatttgtcgtgctatcaagtacttctca 14868621  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 14862332 - 14862372
Alignment:
Q  53 agagaagtgctatataagacgagttcttagcatacgacaca 93  Q
    ||||||||||||||||| |||||| ||||||| ||||||||    
T  14862332 agagaagtgctatataacacgagtccttagcacacgacaca 14862372  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34232161 - 34232129
Alignment:
Q  13 aatatgaacacaatcattttaaattccaattta 45  Q
    |||||||||||||||||||||||||||||||||    
T  34232161 aatatgaacacaatcattttaaattccaattta 34232129  T

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