View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_46 (Length: 288)
Name: NF15324_low_46
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 36242400 - 36242554
Alignment:
| Q |
77 |
aatgattaatataaaagccacgtgaactacaagctgattggcttatgtttctgtctattatgatgagtccacgttattatgcatgaataataaataagcc |
176 |
Q |
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| T |
36242400 |
aatgactaatataaaagccacgtgaactacaagctgattggct-atgtgtttctc-------atgtgtccac---attatgcatgaataataaataagcc |
36242488 |
T |
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| Q |
177 |
tatcctaactactatctgtttgaaaaccctaaattttgaaccataacctcctctcctcccaacgtccta |
245 |
Q |
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| T |
36242489 |
taacctaacta---tctgtttgaaaaccctaaattttgaaccatgacctcctctcctcccaacgtccta |
36242554 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 36241335 - 36241394
Alignment:
| Q |
18 |
cttagtacgtgattaaggaagtgaataacatcaacattaatgaataatagacgcaactaa |
77 |
Q |
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| T |
36241335 |
cttagtacgtgattaaggaagtgaataacatcatcattaatgaacaatagacgcaactaa |
36241394 |
T |
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