View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15324_low_5 (Length: 606)

Name: NF15324_low_5
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15324_low_5
NF15324_low_5
[»] chr3 (1 HSPs)
chr3 (232-435)||(19346650-19346852)
[»] chr5 (4 HSPs)
chr5 (231-461)||(31888264-31888492)
chr5 (336-464)||(24765343-24765471)
chr5 (283-344)||(24777658-24777719)
chr5 (558-599)||(31888124-31888165)
[»] chr6 (5 HSPs)
chr6 (231-464)||(17705575-17705804)
chr6 (185-228)||(34150923-34150966)
chr6 (185-228)||(34163539-34163582)
chr6 (140-169)||(34150852-34150881)
chr6 (140-169)||(34163468-34163497)
[»] scaffold0166 (2 HSPs)
scaffold0166 (336-464)||(7840-7968)
scaffold0166 (283-344)||(20041-20102)
[»] chr4 (1 HSPs)
chr4 (283-457)||(26896016-26896189)
[»] chr7 (2 HSPs)
chr7 (141-228)||(14232128-14232221)
chr7 (141-228)||(14236902-14236995)
[»] chr8 (1 HSPs)
chr8 (381-464)||(25276645-25276728)
[»] chr1 (1 HSPs)
chr1 (141-219)||(34022123-34022207)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 232 - 435
Target Start/End: Complemental strand, 19346852 - 19346650
Alignment:
Q  232 tttttctaaattactctctctaaattagtgggtaaaataccctctgctgacgtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaac 331  Q
    ||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  19346852 tttttttagattaccctctctaaattagtgggtaaa-taccctctgctgacgtggaccaattaaaatgatcaatatgaactacattaaataaagtcaaac 19346754  T
Q  332 atataattatattttacgtattttgaatatattttcgttatttacaaattcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatctaa 431  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  19346753 atataattacattttatgtattttgaatatatttttgttatttacatattctccccacatttaattaatgggtttttatgttttaaatcaagaaatctaa 19346654  T
Q  432 tgaa 435  Q
    ||||    
T  19346653 tgaa 19346650  T

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Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 31888492 - 31888264
Alignment:
Q  231 ttttttctaaattactctctctaaattagtgggtaaaataccctctgctgacgtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaa 330  Q
    |||||| || ||||| |||||||||||| |||||||| ||||||  ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  31888492 ttttttttagattaccctctctaaattaatgggtaaa-taccctg-gctgatgtggaccaattaaaatgaacaatgtgaactacattaaataaagtcaaa 31888395  T
Q  331 catataattatattttacgtattttgaatatattttcgttatttacaaattcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatcta 430  Q
    |||||||||  ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  31888394 catataattgcattttacgtattttgaatatatttatgttatttacatattcaccccacattcaattaatgagtttttatgttttaaatcaagaaatcta 31888295  T
Q  431 atgaaatatttcgttacctcatttcaattgt 461  Q
    ||||||| ||| |||||||||||||||||||    
T  31888294 atgaaatcttttgttacctcatttcaattgt 31888264  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 336 - 464
Target Start/End: Complemental strand, 24765471 - 24765343
Alignment:
Q  336 aattatattttacgtattttgaatatattttcgttatttacaaattcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatctaatgaa 435  Q
    ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| || ||||||| |||||| || ||||||||||||    
T  24765471 aattatattttacgtattttgaatatatttttgttatttacatactcaccccacatttaattaatgtgtctttatgttttaaataaaaaaatctaatgaa 24765372  T
Q  436 atatttcgttacctcatttcaattgttta 464  Q
    || |||||||||||| |||||||||||||    
T  24765371 atctttcgttacctcgtttcaattgttta 24765343  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 24777719 - 24777658
Alignment:
Q  283 gtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaacatataattatatt 344  Q
    ||||| ||||||| |||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  24777719 gtggaccaattaagatgaaatatgtgaactacactaagtaaagtcaaacatataattatatt 24777658  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 31888165 - 31888124
Alignment:
Q  558 acactatgtcttagtgttttttcaatcttgattcttcttctc 599  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  31888165 acactatttcttagtgttttttcaatcttggttcttcttctc 31888124  T

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Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 231 - 464
Target Start/End: Complemental strand, 17705804 - 17705575
Alignment:
Q  231 ttttttctaaattactctctctaaattagtgggtaaaataccctctgctgacgtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaa 330  Q
    ||||||||| ||||| || || |||||  |||||||  ||||||||||| | ||||| |||||||||| |||||||||||| | ||||| |||||||||     
T  17705804 ttttttctatattaccctttccaaatttatgggtaat-taccctctgcttatgtggaccaattaaaataaacaatatgaacaatattaattaaagtcaa- 17705707  T
Q  331 catataattatattttacgtattttgaatatattttcgttatttacaaattcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatcta 430  Q
      |||||||||||||||| ||||||||||||||||| |||||||||| | | | || ||||| |||||||| || ||||||| ||| ||||| |||||||    
T  17705706 --tataattatattttacatattttgaatatatttttgttatttacatacttatcctacatttaattaatgtgtctttatgttttagatcaaaaaatcta 17705609  T
Q  431 atgaaatatttcgttacctcatttcaattgttta 464  Q
    || |||| || |||| ||||||||||||||||||    
T  17705608 ataaaatcttccgttgcctcatttcaattgttta 17705575  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 34150923 - 34150966
Alignment:
Q  185 gcatgtacattttatttctaattgtaatttcatctgtatctagt 228  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||    
T  34150923 gcatttacatttcatttctaattgtaatttcatctgcatctagt 34150966  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 34163539 - 34163582
Alignment:
Q  185 gcatgtacattttatttctaattgtaatttcatctgtatctagt 228  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||    
T  34163539 gcatttacatttcatttctaattgtaatttcatctgcatctagt 34163582  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 34150852 - 34150881
Alignment:
Q  140 atatcaacatatgaagaaaataaagagcaa 169  Q
    ||||||||||||||||||||||||||||||    
T  34150852 atatcaacatatgaagaaaataaagagcaa 34150881  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 34163468 - 34163497
Alignment:
Q  140 atatcaacatatgaagaaaataaagagcaa 169  Q
    ||||||||||||||||||||||||||||||    
T  34163468 atatcaacatatgaagaaaataaagagcaa 34163497  T

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Target: scaffold0166 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 336 - 464
Target Start/End: Complemental strand, 7968 - 7840
Alignment:
Q  336 aattatattttacgtattttgaatatattttcgttatttacaaattcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatctaatgaa 435  Q
    ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| || ||||||| |||||| || ||||||||||||    
T  7968 aattatattttacgtattttgaatatatttttgttatttacatactcaccccacatttaattaatgtgtctttatgttttaaataaaaaaatctaatgaa 7869  T
Q  436 atatttcgttacctcatttcaattgttta 464  Q
    || |||||||||||| |||||||||||||    
T  7868 atctttcgttacctcgtttcaattgttta 7840  T

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Target: scaffold0166; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 20102 - 20041
Alignment:
Q  283 gtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaacatataattatatt 344  Q
    ||||| ||||||| |||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  20102 gtggaccaattaagatgaaatatgtgaactacactaagtaaagtcaaacatataattatatt 20041  T

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Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 283 - 457
Target Start/End: Complemental strand, 26896189 - 26896016
Alignment:
Q  283 gtggatcaattaaaatgaacaatatgaactacattaaataaagtcaaacatataattatattttacgtattttgaatatattttcgttatttacaaattc 382  Q
    ||||| |||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| | ||    
T  26896189 gtggaccaattaaaataaacaatataaacaacattaattaaagtcaaacatataattatattttacatattttaaatatatttttgttatttacatactc 26896090  T
Q  383 accccacattcaattaatgggtttttatgtcttaaatcaagaaatctaatgaaatatttcgttacctcatttcaa 457  Q
    | |  |||||||||||||| || ||||||| ||| || || ||||||||| |||| ||||||| |||||||||||    
T  26896089 atcttacattcaattaatgtgtctttatgttttagat-aaaaaatctaataaaatctttcgttgcctcatttcaa 26896016  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 14232128 - 14232221
Alignment:
Q  141 tatcaacatatgaagaaaataaagagcaagttaaataattagaa------gcatgtacattttatttctaattgtaatttcatctgtatctagt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||      |||| | ||||| |||||||| |||||||||||||| |||||||    
T  14232128 tatcaacatatgaagaaaataaagagcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagt 14232221  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 14236902 - 14236995
Alignment:
Q  141 tatcaacatatgaagaaaataaagagcaagttaaataattagaa------gcatgtacattttatttctaattgtaatttcatctgtatctagt 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||      |||| | ||||| |||||||| |||||||||||||| |||||||    
T  14236902 tatcaacatatgaagaaaataaagagcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagt 14236995  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 25276728 - 25276645
Alignment:
Q  381 tcaccccacattcaattaatgggtttttatgtcttaaatcaagaaatctaatgaaatatttcgttacctcatttcaattgttta 464  Q
    ||||| || |||||||| ||| |||||||||| |||||| || ||||||||||||||| |||||| ||| ||||||||||||||    
T  25276728 tcacctcatattcaatttatgtgtttttatgttttaaataaaaaaatctaatgaaatagttcgttccctaatttcaattgttta 25276645  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 34022207 - 34022123
Alignment:
Q  141 tatcaacatatgaagaaaataaagagcaagttaaataattagaa------gcatgtacattttatttctaattgtaatttcatct 219  Q
    ||||||||||||||||||||||||||||| |||| |||||||||      |||| ||||||| |||||||||| |||||||||||    
T  34022207 tatcaacatatgaagaaaataaagagcaaattaactaattagaagcatttgcatctacatttcatttctaattataatttcatct 34022123  T

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