View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15324_low_56 (Length: 256)
Name: NF15324_low_56
Description: NF15324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15324_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 50984398 - 50984581
Alignment:
| Q |
55 |
tatgcggtgattatgattataagataactaaacacattttattctgattatgattatagtacacacagccaagccaattgcgaagccggcctcttctaag |
154 |
Q |
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| T |
50984398 |
tatgcggtgattatgattataagataactaaacacattttattctgattatgattatagtacacacagccaagccaattgtgaagccggcctcttctaag |
50984497 |
T |
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| Q |
155 |
ttgatactagacaagaagctgtaggggtgcatttttcgggtcttttggtagggcttaagtagagtttgaccttgggttgtccgt |
238 |
Q |
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| T |
50984498 |
ttgatactagacaagaagctgtaggggtgcatttttcgggtctttttgtaaggcttaagtagagtttgaccttgggttgtccgt |
50984581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 51087532 - 51087715
Alignment:
| Q |
55 |
tatgcggtgattatgattataagataactaaacacattttattctgattatgattatagtacacacagccaagccaattgcgaagccggcctcttctaag |
154 |
Q |
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| T |
51087532 |
tatgcggtgattatgattataagataactaaacacattttattctgattatgattatagtacacacagccaagccaattgtgaagccggcctcttctaag |
51087631 |
T |
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| Q |
155 |
ttgatactagacaagaagctgtaggggtgcatttttcgggtcttttggtagggcttaagtagagtttgaccttgggttgtccgt |
238 |
Q |
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| T |
51087632 |
ttgatactagacaagaagctgtaggggtgcatttttcgggtctttttgtaaggcttaagtagagtttgaccttgggttgtccgt |
51087715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50984354 - 50984388
Alignment:
| Q |
1 |
gctaccctcttagctagcatttgttttactattac |
35 |
Q |
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| T |
50984354 |
gctaccctcttagctagcatttgttgtactattac |
50984388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51087488 - 51087522
Alignment:
| Q |
1 |
gctaccctcttagctagcatttgttttactattac |
35 |
Q |
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| T |
51087488 |
gctaccctcttagctagcatttgttgtactattac |
51087522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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